Top considerations for creating bioinformatics software documentation

por Karimzadeh, Mehran, Hoffman, Michael M
Publicado 2017

Virtual ChIP-seq: predicting transcription factor binding by learning from the transcriptome

por Karimzadeh, Mehran, Hoffman, Michael M.
Publicado 2022

Umap and Bismap: quantifying genome and methylome mappability

por Karimzadeh, Mehran, Ernst, Carl, Kundaje, Anshul, Hoffman, Michael M
Publicado 2018

Cell–Cell Contact Mediates Gene Expression and Fate Choice of Human Neural Stem/Progenitor Cells

por McIntyre, William B., Karimzadeh, Mehran, Riazalhosseini, Yasser, Khazaei, Mohamad, Fehlings, Michael G.
Publicado 2022

Human papillomavirus integration transforms chromatin to drive oncogenesis

por Karimzadeh, Mehran, Arlidge, Christopher, Rostami, Ariana, Lupien, Mathieu, Bratman, Scott V., Hoffman, Michael M.
Publicado 2023

Massively multiplex single-molecule oligonucleosome footprinting

por Abdulhay, Nour J, McNally, Colin P, Hsieh, Laura J, Kasinathan, Sivakanthan, Keith, Aidan, Estes, Laurel S, Karimzadeh, Mehran, Underwood, Jason G, Goodarzi, Hani, Narlikar, Geeta J, Ramani, Vijay
Publicado 2020

Integrative identification of non-coding regulatory regions driving metastatic prostate cancer

por Woo, Brian J, Moussavi-Baygi, Ruhollah, Karner, Heather, Karimzadeh, Mehran, Garcia, Kristle, Joshi, Tanvi, Yin, Keyi, Navickas, Albertas, Gilbert, Luke A., Wang, Bo, Asgharian, Hosseinali, Feng, Felix Y., Goodarzi, Hani
Publicado 2023

Aberration hubs in protein interaction networks highlight actionable targets in cancer

por Karimzadeh, Mehran, Jandaghi, Pouria, Papadakis, Andreas I., Trainor, Sebastian, Rung, Johan, Gonzàlez-Porta, Mar, Scelo, Ghislaine, Vasudev, Naveen S., Brazma, Alvis, Huang, Sidong, Banks, Rosamonde E., Lathrop, Mark, Najafabadi, Hamed S., Riazalhosseini, Yasser
Publicado 2018

The molecular consequences of androgen activity in the human breast

por Raths, Florian, Karimzadeh, Mehran, Ing, Nathan, Martinez, Andrew, Yang, Yoona, Qu, Ying, Lee, Tian-Yu, Mulligan, Brianna, Devkota, Suzanne, Tilley, Wayne T., Hickey, Theresa E., Wang, Bo, Giuliano, Armando E., Bose, Shikha, Goodarzi, Hani, Ray, Edward C., Cui, Xiaojiang, Knott, Simon R.V.
Publicado 2023

Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity

por McEvoy, Caitriona M., Murphy, Julia M., Zhang, Lin, Clotet-Freixas, Sergi, Mathews, Jessica A., An, James, Karimzadeh, Mehran, Pouyabahar, Delaram, Su, Shenghui, Zaslaver, Olga, Röst, Hannes, Arambewela, Rangi, Liu, Lewis Y., Zhang, Sally, Lawson, Keith A., Finelli, Antonio, Wang, Bo, MacParland, Sonya A., Bader, Gary D., Konvalinka, Ana, Crome, Sarah Q.
Publicado 2022

Multiscale interactome analysis coupled with off-target drug predictions reveals drug repurposing candidates for human coronavirus disease

por Sugiyama, Michael G., Cui, Haotian, Redka, Dar’ya S., Karimzadeh, Mehran, Rujas, Edurne, Maan, Hassaan, Hayat, Sikander, Cheung, Kyle, Misra, Rahul, McPhee, Joseph B., Viirre, Russell D., Haller, Andrew, Botelho, Roberto J., Karshafian, Raffi, Sabatinos, Sarah A., Fairn, Gregory D., Madani Tonekaboni, Seyed Ali, Windemuth, Andreas, Julien, Jean-Philippe, Shahani, Vijay, MacKinnon, Stephen S., Wang, Bo, Antonescu, Costin N.
Publicado 2021

Experimental and natural evidence of SARS-CoV-2-infection-induced activation of type I interferon responses

por Banerjee, Arinjay, El-Sayes, Nader, Budylowski, Patrick, Jacob, Rajesh Abraham, Richard, Daniel, Maan, Hassaan, Aguiar, Jennifer A., Demian, Wael L., Baid, Kaushal, D'Agostino, Michael R., Ang, Jann Catherine, Murdza, Tetyana, Tremblay, Benjamin J.-M., Afkhami, Sam, Karimzadeh, Mehran, Irving, Aaron T., Yip, Lily, Ostrowski, Mario, Hirota, Jeremy A., Kozak, Robert, Capellini, Terence D., Miller, Matthew S., Wang, Bo, Mubareka, Samira, McGeer, Allison J., McArthur, Andrew G., Doxey, Andrew C., Mossman, Karen
Publicado 2021