High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County

por Karthikeyan, Smruthi, Ronquillo, Nancy, Belda-Ferre, Pedro, Alvarado, Destiny, Javidi, Tara, Longhurst, Christopher A., Knight, Rob
Publicado 2021

Optimizing campus-wide COVID-19 test notifications with interpretable wastewater time-series features using machine learning models

por Lin, Tuo, Karthikeyan, Smruthi, Satterlund, Alysson, Schooley, Robert, Knight, Rob, De Gruttola, Victor, Martin, Natasha, Zou, Jingjing
Publicado 2023

Beach sand oil spills select for generalist microbial populations

por Heritier-Robbins, Patrick, Karthikeyan, Smruthi, Hatt, Janet K., Kim, Minjae, Huettel, Markus, Kostka, Joel E., Konstantinidis, Konstantinos T., Rodriguez-R, Luis M.
Publicado 2021

Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus

por Karthikeyan, Smruthi, Nguyen, Andrew, McDonald, Daniel, Zong, Yijian, Ronquillo, Nancy, Ren, Junting, Zou, Jingjing, Farmer, Sawyer, Humphrey, Greg, Henderson, Diana, Javidi, Tara, Messer, Karen, Anderson, Cheryl, Schooley, Robert, Martin, Natasha K., Knight, Rob
Publicado 2021

Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies

por Usyk, Mykhaylo, Peters, Brandilyn A., Karthikeyan, Smruthi, McDonald, Daniel, Sollecito, Christopher C., Vazquez-Baeza, Yoshiki, Shaffer, Justin P., Gellman, Marc D., Talavera, Gregory A., Daviglus, Martha L., Thyagarajan, Bharat, Knight, Rob, Qi, Qibin, Kaplan, Robert, Burk, Robert D.
Publicado 2023

Unlocking capacities of viral genomics for the COVID-19 pandemic response

por Knyazev, Sergey, Chhugani, Karishma, Sarwal, Varuni, Ayyala, Ram, Singh, Harman, Karthikeyan, Smruthi, Deshpande, Dhrithi, Comarova, Zoia, Lu, Angela, Porozov, Yuri, Wu, Aiping, Abedalthagafi, Malak S., Nagaraj, Shivashankar H., Smith, Adam L., Skums, Pavel, Ladner, Jason, Lam, Tommy Tsan-Yuk, Wu, Nicholas C., Zelikovsky, Alex, Knight, Rob, Crandall, Keith A., Mangul, Serghei
Publicado 2021

Wastewater surveillance for SARS-CoV-2 on college campuses: Initial efforts, lessons learned and research needs

por Harris-Lovett, Sasha, Nelson, Kara, Beamer, Paloma, Bischel, Heather N., Bivins, Aaron, Bruder, Andrea, Butler, Caitlyn, Camenisch, Todd D., De Long, Susan K., Karthikeyan, Smruthi, Larsen, David A., Meierdiercks, Katherine, Mouser, Paula, Pagsuyoin, Sheree, Prasek, Sarah, Radniecki, Tyler S., Ram, Jeffrey L., Roper, D. Keith, Safford, Hannah, Sherchan, Samendra P., Shuster, William, Stalder, Thibault, Wheeler, Robert T., Korfmacher, Katrina Smith
Publicado 2021

Wastewater Surveillance for SARS-CoV-2 on College Campuses: Initial Efforts, Lessons Learned, and Research Needs

por Harris-Lovett, Sasha, Nelson, Kara L., Beamer, Paloma, Bischel, Heather N., Bivins, Aaron, Bruder, Andrea, Butler, Caitlyn, Camenisch, Todd D., De Long, Susan K., Karthikeyan, Smruthi, Larsen, David A., Meierdiercks, Katherine, Mouser, Paula J., Pagsuyoin, Sheree, Prasek, Sarah M., Radniecki, Tyler S., Ram, Jeffrey L., Roper, D. Keith, Safford, Hannah, Sherchan, Samendra P., Shuster, William, Stalder, Thibault, Wheeler, Robert T., Korfmacher, Katrina Smith
Publicado 2021

Wastewater and surface monitoring to detect COVID-19 in elementary school settings: The Safer at School Early Alert project

por Fielding-Miller, Rebecca, Karthikeyan, Smruthi, Gaines, Tommi, Garfein, Richard S., Salido, Rodolfo A., Cantu, Victor J., Kohn, Laura, Martin, Natasha K, Wynn, Adriane, Wijaya, Carrissa, Flores, Marlene, Omaleki, Vinton, Majnoonian, Araz, Gonzalez-Zuniga, Patricia, Nguyen, Megan, Vo, Anh V, Le, Tina, Duong, Dawn, Hassani, Ashkan, Tweeten, Samantha, Jepsen, Kristen, Henson, Benjamin, Hakim, Abbas, Birmingham, Amanda, De Hoff, Peter, Mark, Adam M., Nasamran, Chanond A, Rosenthal, Sara Brin, Moshiri, Niema, Fisch, Kathleen M., Humphrey, Greg, Farmer, Sawyer, Tubb, Helena M., Valles, Tommy, Morris, Justin, Kang, Jaeyoung, Khaleghi, Behnam, Young, Colin, Akel, Ameen D, Eilert, Sean, Eno, Justin, Curewitz, Ken, Laurent, Louise C, Rosing, Tajana, Knight, Rob
Publicado 2023

Safer at school early alert: an observational study of wastewater and surface monitoring to detect COVID-19 in elementary schools

por Fielding-Miller, Rebecca, Karthikeyan, Smruthi, Gaines, Tommi, Garfein, Richard S., Salido, Rodolfo A., Cantu, Victor J., Kohn, Laura, Martin, Natasha K., Wynn, Adriane, Wijaya, Carrissa, Flores, Marlene, Omaleki, Vinton, Majnoonian, Araz, Gonzalez-Zuniga, Patricia, Nguyen, Megan, Vo, Anh V., Le, Tina, Duong, Dawn, Hassani, Ashkan, Tweeten, Samantha, Jepsen, Kristen, Henson, Benjamin, Hakim, Abbas, Birmingham, Amanda, De Hoff, Peter, Mark, Adam M., Nasamran, Chanond A., Rosenthal, Sara Brin, Moshiri, Niema, Fisch, Kathleen M., Humphrey, Greg, Farmer, Sawyer, Tubb, Helena M., Valles, Tommy, Morris, Justin, Kang, Jaeyoung, Khaleghi, Behnam, Young, Colin, Akel, Ameen D., Eilert, Sean, Eno, Justin, Curewitz, Ken, Laurent, Louise C., Rosing, Tajana, Knight, Rob
Publicado 2023

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

por Shaffer, Justin P., Nothias, Louis-Félix, Thompson, Luke R., Sanders, Jon G., Salido, Rodolfo A., Couvillion, Sneha P., Brejnrod, Asker D., Lejzerowicz, Franck, Haiminen, Niina, Huang, Shi, Lutz, Holly L., Zhu, Qiyun, Martino, Cameron, Morton, James T., Karthikeyan, Smruthi, Nothias-Esposito, Mélissa, Dührkop, Kai, Böcker, Sebastian, Kim, Hyun Woo, Aksenov, Alexander A., Bittremieux, Wout, Minich, Jeremiah J., Marotz, Clarisse, Bryant, MacKenzie M., Sanders, Karenina, Schwartz, Tara, Humphrey, Greg, Vásquez-Baeza, Yoshiki, Tripathi, Anupriya, Parida, Laxmi, Carrieri, Anna Paola, Beck, Kristen L., Das, Promi, González, Antonio, McDonald, Daniel, Ladau, Joshua, Karst, Søren M., Albertsen, Mads, Ackermann, Gail, DeReus, Jeff, Thomas, Torsten, Petras, Daniel, Shade, Ashley, Stegen, James, Song, Se Jin, Metz, Thomas O., Swafford, Austin D., Dorrestein, Pieter C., Jansson, Janet K., Gilbert, Jack A., Knight, Rob
Publicado 2022

Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission

por Karthikeyan, Smruthi, Levy, Joshua I, De Hoff, Peter, Humphrey, Greg, Birmingham, Amanda, Jepsen, Kristen, Farmer, Sawyer, Tubb, Helena M., Valles, Tommy, Tribelhorn, Caitlin E, Tsai, Rebecca, Aigner, Stefan, Sathe, Shashank, Moshiri, Niema, Henson, Benjamin, Mark, Adam M., Hakim, Abbas, Baer, Nathan A, Barber, Tom, Belda-Ferre, Pedro, Chacón, Marisol, Cheung, Willi, Cresini, Evelyn S, Eisner, Emily R, Lastrella, Alma L, Lawrence, Elijah S, Marotz, Clarisse A, Ngo, Toan T, Ostrander, Tyler, Plascencia, Ashley, Salido, Rodolfo A, Seaver, Phoebe, Smoot, Elizabeth W, McDonald, Daniel, Neuhard, Robert M, Scioscia, Angela L, Satterlund, Alysson M., Simmons, Elizabeth H, Abelman, Dismas B., Brenner, David, Bruner, Judith C., Buckley, Anne, Ellison, Michael, Gattas, Jeffrey, Gonias, Steven L., Hale, Matt, Hawkins, Faith, Ikeda, Lydia, Jhaveri, Hemlata, Johnson, Ted, Kellen, Vince, Kremer, Brendan, Matthews, Gary, McLawhon, Ronald W., Ouillet, Pierre, Park, Daniel, Pradenas, Allorah, Reed, Sharon, Riggs, Lindsay, Sanders, Alison, Sollenberger, Bradley, Song, Angela, White, Benjamin, Winbush, Terri, Aceves, Christine M, Anderson, Catelyn, Gangavarapu, Karthik, Hufbauer, Emory, Kurzban, Ezra, Lee, Justin, Matteson, Nathaniel L, Parker, Edyth, Perkins, Sarah A, Ramesh, Karthik S, Robles-Sikisaka, Refugio, Schwab, Madison A, Spencer, Emily, Wohl, Shirlee, Nicholson, Laura, Mchardy, Ian H, Dimmock, David P, Hobbs, Charlotte A, Bakhtar, Omid, Harding, Aaron, Mendoza, Art, Bolze, Alexandre, Becker, David, Cirulli, Elizabeth T, Isaksson, Magnus, Barrett, Kelly M Schiabor, Washington, Nicole L, Malone, John D, Schafer, Ashleigh Murphy, Gurfield, Nikos, Stous, Sarah, Fielding-Miller, Rebecca, Garfein, Richard S., Gaines, Tommi, Anderson, Cheryl, Martin, Natasha K., Schooley, Robert, Austin, Brett, MacCannell, Duncan R., Kingsmore, Stephen F, Lee, William, Shah, Seema, McDonald, Eric, Yu, Alexander T., Zeller, Mark, Fisch, Kathleen M, Longhurst, Christopher, Maysent, Patty, Pride, David, Khosla, Pradeep K., Laurent, Louise C., Yeo, Gene W, Andersen, Kristian G, Knight, Rob
Publicado 2022

Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission

por Karthikeyan, Smruthi, Levy, Joshua I., De Hoff, Peter, Humphrey, Greg, Birmingham, Amanda, Jepsen, Kristen, Farmer, Sawyer, Tubb, Helena M., Valles, Tommy, Tribelhorn, Caitlin E., Tsai, Rebecca, Aigner, Stefan, Sathe, Shashank, Moshiri, Niema, Henson, Benjamin, Mark, Adam M., Hakim, Abbas, Baer, Nathan A., Barber, Tom, Belda-Ferre, Pedro, Chacón, Marisol, Cheung, Willi, Cresini, Evelyn S., Eisner, Emily R., Lastrella, Alma L., Lawrence, Elijah S., Marotz, Clarisse A., Ngo, Toan T., Ostrander, Tyler, Plascencia, Ashley, Salido, Rodolfo A., Seaver, Phoebe, Smoot, Elizabeth W., McDonald, Daniel, Neuhard, Robert M., Scioscia, Angela L., Satterlund, Alysson M., Simmons, Elizabeth H., Abelman, Dismas B., Brenner, David, Bruner, Judith C., Buckley, Anne, Ellison, Michael, Gattas, Jeffrey, Gonias, Steven L., Hale, Matt, Hawkins, Faith, Ikeda, Lydia, Jhaveri, Hemlata, Johnson, Ted, Kellen, Vince, Kremer, Brendan, Matthews, Gary, McLawhon, Ronald W., Ouillet, Pierre, Park, Daniel, Pradenas, Allorah, Reed, Sharon, Riggs, Lindsay, Sanders, Alison, Sollenberger, Bradley, Song, Angela, White, Benjamin, Winbush, Terri, Aceves, Christine M., Anderson, Catelyn, Gangavarapu, Karthik, Hufbauer, Emory, Kurzban, Ezra, Lee, Justin, Matteson, Nathaniel L., Parker, Edyth, Perkins, Sarah A., Ramesh, Karthik S., Robles-Sikisaka, Refugio, Schwab, Madison A., Spencer, Emily, Wohl, Shirlee, Nicholson, Laura, McHardy, Ian H., Dimmock, David P., Hobbs, Charlotte A., Bakhtar, Omid, Harding, Aaron, Mendoza, Art, Bolze, Alexandre, Becker, David, Cirulli, Elizabeth T., Isaksson, Magnus, Schiabor Barrett, Kelly M., Washington, Nicole L., Malone, John D., Schafer, Ashleigh Murphy, Gurfield, Nikos, Stous, Sarah, Fielding-Miller, Rebecca, Garfein, Richard S., Gaines, Tommi, Anderson, Cheryl, Martin, Natasha K., Schooley, Robert, Austin, Brett, MacCannell, Duncan R., Kingsmore, Stephen F., Lee, William, Shah, Seema, McDonald, Eric, Yu, Alexander T., Zeller, Mark, Fisch, Kathleen M., Longhurst, Christopher, Maysent, Patty, Pride, David, Khosla, Pradeep K., Laurent, Louise C., Yeo, Gene W., Andersen, Kristian G., Knight, Rob
Publicado 2022