Differential co-expression framework to quantify goodness of biclusters and compare biclustering algorithms

por Chia, Burton Kuan Hui, Karuturi, R Krishna Murthy
Publicado 2010

Identifying Driver Genes in Cancer by Triangulating Gene Expression, Gene Location, and Survival Data

por Rouam, Sigrid, Miller, Lance D, Karuturi, R Krishna Murthy
Publicado 2015

MultiDCoX: Multi-factor analysis of differential co-expression

por Liany, Herty, Rajapakse, Jagath C., Karuturi, R. Krishna Murthy
Publicado 2017

A computational method to aid the design and analysis of single cell RNA-seq experiments for cell type identification

por Abrams, Douglas, Kumar, Parveen, Karuturi, R. Krishna Murthy, George, Joshy
Publicado 2019

ConReg-R: Extrapolative recalibration of the empirical distribution of p-values to improve false discovery rate estimates

por Li, Juntao, Paramita, Puteri, Choi, Kwok Pui, Karuturi, R Krishna Murthy
Publicado 2011

Genome-wide estimation of firing efficiencies of origins of DNA replication from time-course copy number variation data

por Luo, Huaien, Li, Juntao, Eshaghi, Majid, Liu, Jianhua, Karuturi, R Krishna Murthy
Publicado 2010

multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles

por Lawlor, Nathan, Fabbri, Alec, Guan, Peiyong, George, Joshy, Karuturi, R. Krishna Murthy
Publicado 2016

Adaptive expression responses in the Pol-γ null strain of S. pombe depleted of mitochondrial genome

por Chu, Zhaoqing, Li, Juntao, Eshaghi, Majid, Karuturi, R Krishna Murthy, Lin, Kui, Liu, Jianhua
Publicado 2007

Transcriptomic Analyses of Sexual Dimorphism of the Zebrafish Liver and the Effect of Sex Hormones

por Zheng, Weiling, Xu, Hongyan, Lam, Siew Hong, Luo, Huaien, Karuturi, R. Krishna Murthy, Gong, Zhiyuan
Publicado 2013

Zebrafish Whole-Adult-Organism Chemogenomics for Large-Scale Predictive and Discovery Chemical Biology

por Lam, Siew Hong, Mathavan, Sinnakarupan, Tong, Yan, Li, Haixia, Karuturi, R. Krishna Murthy, Wu, Yilian, Vega, Vinsensius B., Liu, Edison T., Gong, Zhiyuan
Publicado 2008

Mouse strain specific gene expression differences for illumina microarray expression profiling in embryos

por Kraus, Petra, Xing, Xing, Lim, Siew Lan, Fun, Max E, Sivakamasundari, V, Yap, Sook Peng, Lee, Haixia, Karuturi, R Krishna Murthy, Lufkin, Thomas
Publicado 2012

Transfer learning‐trained convolutional neural networks identify novel MRI biomarkers of Alzheimer's disease progression

por Li, Yi, Haber, Annat, Preuss, Christoph, John, Cai, Uyar, Asli, Yang, Hongtian Stanley, Logsdon, Benjamin A., Philip, Vivek, Karuturi, R. Krishna Murthy, Carter, Gregory W.
Publicado 2021

REST Regulates Distinct Transcriptional Networks in Embryonic and Neural Stem Cells

por Johnson, Rory, Teh, Christina Hui-leng, Kunarso, Galih, Wong, Kee Yew, Srinivasan, Gopalan, Cooper, Megan L, Volta, Manuela, Chan, Sarah Su-ling, Lipovich, Leonard, Pollard, Steven M, Karuturi, R. Krishna Murthy, Wei, Chia-lin, Buckley, Noel J, Stanton, Lawrence W
Publicado 2008

Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines

por Woo, Xing Yi, Srivastava, Anuj, Graber, Joel H., Yadav, Vinod, Sarsani, Vishal Kumar, Simons, Al, Beane, Glen, Grubb, Stephen, Ananda, Guruprasad, Liu, Rangjiao, Stafford, Grace, Chuang, Jeffrey H., Airhart, Susan D., Karuturi, R. Krishna Murthy, George, Joshy, Bult, Carol J.
Publicado 2019

High-resolution deconstruction of evolution induced by chemotherapy treatments in breast cancer xenografts

por Kim, Hyunsoo, Kumar, Pooja, Menghi, Francesca, Noorbakhsh, Javad, Cerveira, Eliza, Ryan, Mallory, Zhu, Qihui, Ananda, Guruprasad, George, Joshy, Chen, Henry C., Mockus, Susan, Zhang, Chengsheng, Yang, Yan, Keck, James, Karuturi, R. Krishna Murthy, Bult, Carol J., Lee, Charles, Liu, Edison T., Chuang, Jeffrey H.
Publicado 2018

CUP-AI-Dx: A tool for inferring cancer tissue of origin and molecular subtype using RNA gene-expression data and artificial intelligence

por Zhao, Yue, Pan, Ziwei, Namburi, Sandeep, Pattison, Andrew, Posner, Atara, Balachander, Shiva, Paisie, Carolyn A., Reddi, Honey V, Rueter, Jens, Gill, Anthony J, Fox, Stephen, Raghav, Kanwal P.S., Flynn, William F, Tothill, Richard W., Li, Sheng, Karuturi, R. Krishna Murthy, George, Joshy
Publicado 2020

Systems consequences of amplicon formation in human breast cancer

por Inaki, Koichiro, Menghi, Francesca, Woo, Xing Yi, Wagner, Joel P., Jacques, Pierre-Étienne, Lee, Yi Fang, Shreckengast, Phung Trang, Soon, Wendy WeiJia, Malhotra, Ankit, Teo, Audrey S.M., Hillmer, Axel M., Khng, Alexis Jiaying, Ruan, Xiaoan, Ong, Swee Hoe, Bertrand, Denis, Nagarajan, Niranjan, Karuturi, R. Krishna Murthy, Hidalgo Miranda, Alfredo, Liu, Edison T.
Publicado 2014

A Genomically and Clinically Annotated Patient-Derived Xenograft Resource for Preclinical Research in Non–Small Cell Lung Cancer

por Woo, Xing Yi, Srivastava, Anuj, Mack, Philip C., Graber, Joel H., Sanderson, Brian J., Lloyd, Michael W., Chen, Mandy, Domanskyi, Sergii, Gandour-Edwards, Regina, Tsai, Rebekah A., Keck, James, Cheng, Mingshan, Bundy, Margaret, Jocoy, Emily L., Riess, Jonathan W., Holland, William, Grubb, Stephen C., Peterson, James G., Stafford, Grace A., Paisie, Carolyn, Neuhauser, Steven B., Karuturi, R. Krishna Murthy, George, Joshy, Simons, Allen K., Chavaree, Margaret, Tepper, Clifford G., Goodwin, Neal, Airhart, Susan D., Lara, Primo N., Openshaw, Thomas H., Liu, Edison T., Gandara, David R., Bult, Carol J.
Publicado 2022

An Oestrogen Receptor α-bound Human Chromatin Interactome

por Fullwood, Melissa J., Liu, Mei Hui, Pan, You Fu, Liu, Jun, Han, Xu, Mohamed, Yusoff Bin, Orlov, Yuriy L., Velkov, Stoyan, Ho, Andrea, Mei, Poh Huay, Chew, Elaine G. Y., Huang, Phillips Yao Hui, Welboren, Willem-Jan, Han, Yuyuan, Ooi, Hong-Sain, Ariyaratne, Pramila N., Vega, Vinsensius B., Luo, Yanquan, Tan, Peck Yean, Choy, Pei Ye, Wansa, K. D. Senali Abayratna, Zhao, Bing, Lim, Kar Sian, Leow, Shi Chi, Yow, Jit Sin, Joseph, Roy, Li, Haixia, Desai, Kartiki V., Thomsen, Jane S., Lee, Yew Kok, Karuturi, R. Krishna Murthy, Herve, Thoreau, Bourque, Guillaume, Stunnenberg, Hendrik G., Ruan, Xiaoan, Cacheux-Rataboul, Valere, Sung, Wing-Kin, Liu, Edison T., Wei, Chia-Lin, Cheung, Edwin, Ruan, Yijun
Publicado 2009