Direct assessment of transcription fidelity by high-resolution RNA sequencing

por Imashimizu, Masahiko, Oshima, Taku, Lubkowska, Lucyna, Kashlev, Mikhail
Publicado 2013

Transcription elongation: Heterogeneous tracking of RNA polymerase and its biological implications

por Imashimizu, Masahiko, Shimamoto, Nobuo, Oshima, Taku, Kashlev, Mikhail
Publicado 2014

The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes

por Bintu, Lacramioara, Kopaczynska, Marta, Hodges, Courtney, Lubkowska, Lucyna, Kashlev, Mikhail, Bustamante, Carlos
Publicado 2011

Nascent RNA sequencing identifies a widespread sigma70-dependent pausing regulated by Gre factors in bacteria

por Sun, Zhe, Yakhnin, Alexander V., FitzGerald, Peter C., Mclntosh, Carl E., Kashlev, Mikhail
Publicado 2021

Effects of Friedreich's ataxia (GAA)(n)·(TTC)(n) repeats on RNA synthesis and stability

por Krasilnikova, Maria M., Kireeva, Maria L., Petrovic, Vladimir, Knijnikova, Nelli, Kashlev, Mikhail, Mirkin, Sergei M.
Publicado 2007

Bacteriophage λ N protein inhibits transcription slippage by Escherichia coli RNA polymerase

por Parks, Adam R., Court, Carolyn, Lubkowska, Lucyna, Jin, Ding J., Kashlev, Mikhail, Court, Donald L.
Publicado 2014

T7 replisome directly overcomes DNA damage

por Sun, Bo, Pandey, Manjula, Inman, James T., Yang, Yi, Kashlev, Mikhail, Patel, Smita S., Wang, Michelle D.
Publicado 2015

RNA–DNA and DNA–DNA base-pairing at the upstream edge of the transcription bubble regulate translocation of RNA polymerase and transcription rate

por KIreeva, Maria, Trang, Cyndi, Matevosyan, Gayane, Turek-Herman, Joshua, Chasov, Vitaly, Lubkowska, Lucyna, Kashlev, Mikhail
Publicado 2018

Robust regulation of transcription pausing in Escherichia coli by the ubiquitous elongation factor NusG

por Yakhnin, Alexander V., Bubunenko, Mikhail, Mandell, Zachary F., Lubkowska, Lucyna, Husher, Sara, Babitzke, Paul, Kashlev, Mikhail
Publicado 2023

Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism

por Dangkulwanich, Manchuta, Ishibashi, Toyotaka, Liu, Shixin, Kireeva, Maria L, Lubkowska, Lucyna, Kashlev, Mikhail, Bustamante, Carlos J
Publicado 2013

Visualizing translocation dynamics and nascent transcript errors in paused RNA polymerases in vivo

por Imashimizu, Masahiko, Takahashi, Hiroki, Oshima, Taku, McIntosh, Carl, Bubunenko, Mikhail, Court, Donald L., Kashlev, Mikhail
Publicado 2015

Erratum to: Visualizing translocation dynamics and nascent transcript errors in paused RNA polymerases in vivo

por Imashimizu, Masahiko, Takahashi, Hiroki, Oshima, Taku, McIntosh, Carl, Bubunenko, Mikhail, Court, Donald L., Kashlev, Mikhail
Publicado 2015

Synergistic action of RNA polymerases in overcoming the nucleosomal barrier

por Jin, Jing, Bai, Lu, Johnson, Daniel S., Fulbright, Robert M., Kireeva, Maria L., Kashlev, Mikhail, Wang, Michelle D.
Publicado 2010

In Silico Design and Enzymatic Synthesis of Functional RNA Nanoparticles

por Afonin, Kirill A., Kasprzak, Wojciech K., Bindewald, Eckart, Kireeva, Maria, Viard, Mathias, Kashlev, Mikhail, Shapiro, Bruce A.
Publicado 2014

NusG-Dependent RNA Polymerase Pausing and Tylosin-Dependent Ribosome Stalling Are Required for Tylosin Resistance by Inducing 23S rRNA Methylation in Bacillus subtilis

por Yakhnin, Helen, Yakhnin, Alexander V., Mouery, Brandon L., Mandell, Zachary F., Karbasiafshar, Catherine, Kashlev, Mikhail, Babitzke, Paul
Publicado 2019

NusG is an intrinsic transcription termination factor that stimulates motility and coordinates gene expression with NusA

por Mandell, Zachary F, Oshiro, Reid T, Yakhnin, Alexander V, Vishwakarma, Rishi, Kashlev, Mikhail, Kearns, Daniel B, Babitzke, Paul
Publicado 2021

A Genetic Assay for Transcription Errors Reveals Multilayer Control of RNA Polymerase II Fidelity

por Irvin, Jordan D., Kireeva, Maria L., Gotte, Deanna R., Shafer, Brenda K., Huang, Ingold, Kashlev, Mikhail, Strathern, Jeffrey N.
Publicado 2014

Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase

por Kireeva, Maria L, Opron, Kristopher, Seibold, Steve A, Domecq, Céline, Cukier, Robert I, Coulombe, Benoit, Kashlev, Mikhail, Burton, Zachary F
Publicado 2012

A Cre Transcription Fidelity Reporter Identifies GreA as a Major RNA Proofreading Factor in Escherichia coli

por Bubunenko, Mikhail G., Court, Carolyn B., Rattray, Alison J., Gotte, Deanna R., Kireeva, Maria L., Irizarry-Caro, Jorge A., Li, Xintian, Jin, Ding J., Court, Donald L., Strathern, Jeffrey N., Kashlev, Mikhail
Publicado 2017

Co-transcriptional production of RNA–DNA hybrids for simultaneous release of multiple split functionalities

por Afonin, Kirill A., Desai, Ravi, Viard, Mathias, Kireeva, Maria L., Bindewald, Eckart, Case, Christopher L., Maciag, Anna E., Kasprzak, Wojciech K., Kim, Taejin, Sappe, Alison, Stepler, Marissa, KewalRamani, Vineet N., Kashlev, Mikhail, Blumenthal, Robert, Shapiro, Bruce A.
Publicado 2014