An extensible spatial and temporal epidemiological modelling system

por Ford, Daniel Alexander, Kaufman, James H, Eiron, Iris
Publicado 2006

Statistical Mechanics and Thermodynamics of Viral Evolution

por Jones, Barbara A., Lessler, Justin, Bianco, Simone, Kaufman, James H.
Publicado 2015

The Cost of Simplifying Air Travel When Modeling Disease Spread

por Lessler, Justin, Kaufman, James H., Ford, Daniel A., Douglas, Judith V.
Publicado 2009

A global model of malaria climate sensitivity: comparing malaria response to historic climate data based on simulation and officially reported malaria incidence

por Edlund, Stefan, Davis, Matthew, Douglas, Judith V, Kershenbaum, Arik, Waraporn, Narongrit, Lessler, Justin, Kaufman, James H
Publicado 2012

Re-purposing software for functional characterization of the microbiome

por Gardiner, Laura-Jayne, Haiminen, Niina, Utro, Filippo, Parida, Laxmi, Seabolt, Ed, Krishna, Ritesh, Kaufman, James H.
Publicado 2021

Analysis and forecasting of global real time RT-PCR primers and probes for SARS-CoV-2

por Nayar, Gowri, Seabolt, Edward E., Kunitomi, Mark, Agarwal, Akshay, Beck, Kristen L., Mukherjee, Vandana, Kaufman, James H.
Publicado 2021

Hierarchically Labeled Database Indexing Allows Scalable Characterization of Microbiomes

por Utro, Filippo, Haiminen, Niina, Siragusa, Enrico, Gardiner, Laura-Jayne, Seabolt, Ed, Krishna, Ritesh, Kaufman, James H., Parida, Laxmi
Publicado 2020

ggMOB: Elucidation of genomic conjugative features and associated cargo genes across bacterial genera using genus-genus mobilization networks

por Nayar, Gowri, Terrizzano, Ignacio, Seabolt, Ed, Agarwal, Akshay, Boucher, Christina, Ruiz, Jaime, Slizovskiy, Ilya B., Kaufman, James H., Noyes, Noelle R.
Publicado 2022

Predicting Epitope Candidates for SARS-CoV-2

por Agarwal, Akshay, Beck, Kristen L., Capponi, Sara, Kunitomi, Mark, Nayar, Gowri, Seabolt, Edward, Mahadeshwar, Gandhar, Bianco, Simone, Mukherjee, Vandana, Kaufman, James H.
Publicado 2022

Globally local: Hyper-local modeling for accurate forecast of COVID-19

por Gopalakrishnan, Vishrawas, Pethe, Sayali, Kefayati, Sarah, Srinivasan, Raman, Hake, Paul, Deshpande, Ajay, Liu, Xuan, Hoang, Etter, Davila, Marbelly, Bianco, Simone, Kaufman, James H.
Publicado 2021

Semi-Supervised Pipeline for Autonomous Annotation of SARS-CoV-2 Genomes

por Beck, Kristen L., Seabolt, Edward, Agarwal, Akshay, Nayar, Gowri, Bianco, Simone, Krishnareddy, Harsha, Ngo, Timothy A., Kunitomi, Mark, Mukherjee, Vandana, Kaufman, James H.
Publicado 2021

STEM: An Open Source Tool for Disease Modeling

por Douglas, Judith V., Bianco, Simone, Edlund, Stefan, Engelhardt, Tekla, Filter, Matthias, Günther, Taras, Hu, Kun (Maggie), Nixon, Emily J., Sevilla, Nereyda L., Swaid, Ahmad, Kaufman, James H.
Publicado 2019

Food authentication from shotgun sequencing reads with an application on high protein powders

por Haiminen, Niina, Edlund, Stefan, Chambliss, David, Kunitomi, Mark, Weimer, Bart C., Ganesan, Balasubramanian, Baker, Robert, Markwell, Peter, Davis, Matthew, Huang, B. Carol, Kong, Nguyet, Prill, Robert J., Marlowe, Carl H., Quintanar, André, Pierre, Sophie, Dubois, Geraud, Kaufman, James H., Parida, Laxmi, Beck, Kristen L.
Publicado 2019