Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens

por Hyun, Jason C., Kavvas, Erol S., Monk, Jonathan M., Palsson, Bernhard O.
Publicado 2020

Systems Biology and Pangenome of Salmonella O-Antigens

por Seif, Yara, Monk, Jonathan M., Machado, Henrique, Kavvas, Erol, Palsson, Bernhard O.
Publicado 2019

A biochemically-interpretable machine learning classifier for microbial GWAS

por Kavvas, Erol S., Yang, Laurence, Monk, Jonathan M., Heckmann, David, Palsson, Bernhard O.
Publicado 2020

iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of Acinetobacter baumannii AYE

por Norsigian, Charles J., Kavvas, Erol, Seif, Yara, Palsson, Bernhard O., Monk, Jonathan M.
Publicado 2018

Independent component analysis recovers consistent regulatory signals from disparate datasets

por Sastry, Anand V., Hu, Alyssa, Heckmann, David, Poudel, Saugat, Kavvas, Erol, Palsson, Bernhard O.
Publicado 2021

The Staphylococcus aureus Two-Component System AgrAC Displays Four Distinct Genomic Arrangements That Delineate Genomic Virulence Factor Signatures

por Choudhary, Kumari S., Mih, Nathan, Monk, Jonathan, Kavvas, Erol, Yurkovich, James T., Sakoulas, George, Palsson, Bernhard O.
Publicado 2018

Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions

por Kavvas, Erol S., Seif, Yara, Yurkovich, James T., Norsigian, Charles, Poudel, Saugat, Greenwald, William W., Ghatak, Sankha, Palsson, Bernhard O., Monk, Jonathan M.
Publicado 2018

Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa

por Fang, Xin, Monk, Jonathan M., Mih, Nathan, Du, Bin, Sastry, Anand V., Kavvas, Erol, Seif, Yara, Smarr, Larry, Palsson, Bernhard O.
Publicado 2018

Evaluation of rate law approximations in bottom-up kinetic models of metabolism

por Du, Bin, Zielinski, Daniel C., Kavvas, Erol S., Dräger, Andreas, Tan, Justin, Zhang, Zhen, Ruggiero, Kayla E., Arzumanyan, Garri A., Palsson, Bernhard O.
Publicado 2016

Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits

por Seif, Yara, Kavvas, Erol, Lachance, Jean-Christophe, Yurkovich, James T., Nuccio, Sean-Paul, Fang, Xin, Catoiu, Edward, Raffatellu, Manuela, Palsson, Bernhard O., Monk, Jonathan M.
Publicado 2018

Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance

por Kavvas, Erol S., Catoiu, Edward, Mih, Nathan, Yurkovich, James T., Seif, Yara, Dillon, Nicholas, Heckmann, David, Anand, Amitesh, Yang, Laurence, Nizet, Victor, Monk, Jonathan M., Palsson, Bernhard O.
Publicado 2018

Experimental Evolution Reveals Unifying Systems-Level Adaptations but Diversity in Driving Genotypes

por Kavvas, Erol S., Long, Christopher P., Sastry, Anand, Poudel, Saugat, Antoniewicz, Maciek R., Ding, Yang, Mohamed, Elsayed T., Szubin, Richard, Monk, Jonathan M., Feist, Adam M., Palsson, Bernhard O.
Publicado 2022