Essential site scanning analysis: A new approach for detecting sites that modulate the dispersion of protein global motions

por Kaynak, Burak T., Bahar, Ivet, Doruker, Pemra
Publicado 2020

ClustENMD: efficient sampling of biomolecular conformational space at atomic resolution

por Kaynak, Burak T, Zhang, She, Bahar, Ivet, Doruker, Pemra
Publicado 2021

Predicting allosteric pockets in protein biological assemblages

por Kumar, Ambuj, Kaynak, Burak T, Dorman, Karin S, Doruker, Pemra, Jernigan, Robert L
Publicado 2023

Impact of new variants on SARS-CoV-2 infectivity and neutralization: A molecular assessment of the alterations in the spike-host protein interactions

por Cheng, Mary Hongying, Krieger, James M., Banerjee, Anupam, Xiang, Yufei, Kaynak, Burak, Shi, Yi, Arditi, Moshe, Bahar, Ivet
Publicado 2022

State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps

por Zhang, Yan, Krieger, James, Mikulska-Ruminska, Karolina, Kaynak, Burak, Sorzano, Carlos Oscar S., Carazo, José-María, Xing, Jianhua, Bahar, Ivet
Publicado 2020

ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python

por Zhang, She, Krieger, James M, Zhang, Yan, Kaya, Cihan, Kaynak, Burak, Mikulska-Ruminska, Karolina, Doruker, Pemra, Li, Hongchun, Bahar, Ivet
Publicado 2021

Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods

por Kaynak, Burak T., Krieger, James M., Dudas, Balint, Dahmani, Zakaria L., Costa, Mauricio G. S., Balog, Erika, Scott, Ana Ligia, Doruker, Pemra, Perahia, David, Bahar, Ivet
Publicado 2022

Precise druggability of the PTH type 1 receptor

por Sutkeviciute, Ieva, Lee, Ji Young, White, Alex D., Maria, Christian Santa, Peña, Karina A., Savransky, Sofya, Doruker, Pemra, Li, Hongchun, Lei, Saifei, Kaynak, Burak, Tu, Chialing, Clark, Lisa J., Sanker, Subramaniam, Gardella, Thomas J., Chang, Wenhan, Bahar, Ivet, Vilardaga, Jean-Pierre
Publicado 2022