HIV evolution and diversity in ART-treated patients

por van Zyl, Gert, Bale, Michael J., Kearney, Mary F.
Publicado 2018

New Approaches to Multi-Parametric HIV-1 Genetics Using Multiple Displacement Amplification: Determining the What, How, and Where of the HIV-1 Reservoir

por Patro, Sean C., Niyongabo, Aurelie, Maldarelli, Frank, Kearney, Mary F.
Publicado 2021

HIV-1 Persistence in Children during Suppressive ART

por Katusiime, Mary Grace, Van Zyl, Gert U., Cotton, Mark F., Kearney, Mary F.
Publicado 2021

Low genetic diversity may be an Achilles heel of SARS-CoV-2

por Rausch, Jason W., Capoferri, Adam A., Katusiime, Mary Grace, Patro, Sean C., Kearney, Mary F.
Publicado 2020

2020 SARS-CoV-2 diversification in the United States: Establishing a pre-vaccination baseline

por Capoferri, Adam A., Shao, Wei, Spindler, Jon, Coffin, John M., Rausch, Jason W., Kearney, Mary F.
Publicado 2021

A Pre-Vaccination Baseline of SARS-CoV-2 Genetic Surveillance and Diversity in the United States

por Capoferri, Adam A., Shao, Wei, Spindler, Jon, Coffin, John M., Rausch, Jason W., Kearney, Mary F.
Publicado 2022

A12 Modeling residual HIV replication and the emergence of drug resistance on ART

por Michael Bale, J, Valerie Boltz, F, Mellors, John W, Coffin, John M, Hughes, Stephen H, Kearney, Mary F
Publicado 2019

Therapeutic implications of ongoing alveolar viral replication in COVID-19

por McGonagle, Dennis, Kearney, Mary F, O'Regan, Anthony, O'Donnell, James S, Quartuccio, Luca, Watad, Abdulla, Bridgewood, Charles
Publicado 2022

Mechanistic Analysis of the Broad Antiretroviral Resistance Conferred by HIV-1 Envelope Glycoprotein Mutations

por Hikichi, Yuta, Van Duyne, Rachel, Pham, Phuong, Groebner, Jennifer L., Wiegand, Ann, Mellors, John W., Kearney, Mary F., Freed, Eric O.
Publicado 2021

HIVIntact: a python-based tool for HIV-1 genome intactness inference

por Wright, Imogen A., Bale, Michael J., Shao, Wei, Hu, Wei-Shau, Coffin, John M., Van Zyl, Gert U., Kearney, Mary F.
Publicado 2021

Retrovirus Integration Database (RID): a public database for retroviral insertion sites into host genomes

por Shao, Wei, Shan, Jigui, Kearney, Mary F., Wu, Xiaolin, Maldarelli, Frank, Mellors, John W., Luke, Brian, Coffin, John M., Hughes, Stephen H.
Publicado 2016

Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA

por Boltz, Valerie F., Rausch, Jason, Shao, Wei, Hattori, Junko, Luke, Brian, Maldarelli, Frank, Mellors, John W., Kearney, Mary F., Coffin, John M.
Publicado 2016

NanoHIV: A Bioinformatics Pipeline for Producing Accurate, Near Full-Length HIV Proviral Genomes Sequenced Using the Oxford Nanopore Technology

por Wright, Imogen A., Delaney, Kayla E., Katusiime, Mary Grace K., Botha, Johannes C., Engelbrecht, Susan, Kearney, Mary F., van Zyl, Gert U.
Publicado 2021

Lower pre-ART intra-participant HIV-1 pol diversity may not be associated with virologic failure in adults

por Kearney, Mary F., Spindler, Jonathan, Wiegand, Ann, Shao, Wei, Haubrich, Richard, Riddler, Sharon, Lalama, Christina M., Hughes, Michael D., Coffin, John M., Mellors, John W.
Publicado 2018

Well-mixed plasma and tissue viral populations in RT-SHIV-infected macaques implies a lack of viral replication in the tissues during antiretroviral therapy

por Kearney, Mary F., Anderson, Elizabeth M., Coomer, Charles, Smith, Luke, Shao, Wei, Johnson, Nicholas, Kline, Christopher, Spindler, Jonathan, Mellors, John W., Coffin, John M., Ambrose, Zandrea
Publicado 2015

Ex vivo activation of CD4(+) T-cells from donors on suppressive ART can lead to sustained production of infectious HIV-1 from a subset of infected cells

por Bui, John K., Halvas, Elias K., Fyne, Elizabeth, Sobolewski, Michele D., Koontz, Dianna, Shao, Wei, Luke, Brian, Hong, Feiyu F., Kearney, Mary F., Mellors, John W.
Publicado 2017

Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA

por Shao, Wei, Boltz, Valerie F, Spindler, Jonathan E, Kearney, Mary F, Maldarelli, Frank, Mellors, John W, Stewart, Claudia, Volfovsky, Natalia, Levitsky, Alexander, Stephens, Robert M, Coffin, John M
Publicado 2013

Deep Sequencing Analysis of Individual HIV-1 Proviruses Reveals Frequent Asymmetric Long Terminal Repeats

por Joseph, Kevin W., Halvas, Elias K., Brandt, Leah D., Patro, Sean C., Rausch, Jason W., Chopra, Abha, Mallal, Simon, Kearney, Mary F., Coffin, John M., Mellors, John W.
Publicado 2022

Lack of Detectable HIV-1 Molecular Evolution during Suppressive Antiretroviral Therapy

por Kearney, Mary F., Spindler, Jonathan, Shao, Wei, Yu, Sloane, Anderson, Elizabeth M., O'Shea, Angeline, Rehm, Catherine, Poethke, Carry, Kovacs, Nicholas, Mellors, John W., Coffin, John M., Maldarelli, Frank
Publicado 2014

Tracking HIV-1-Infected Cell Clones Using Integration Site-Specific qPCR

por Brandt, Leah D., Guo, Shuang, Joseph, Kevin W., Jacobs, Jana L., Naqvi, Asma, Coffin, John M., Kearney, Mary F., Halvas, Elias K., Wu, Xiaolin, Hughes, Stephen H., Mellors, John W.
Publicado 2021