Data on master regulators and transcription factor binding sites found by upstream analysis of multi-omics data on methotrexate resistance of colon cancer

por Kel, Alexander E.
Publicado 2016

Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies

por Alamanova, Denitsa, Stegmaier, Philip, Kel, Alexander
Publicado 2010

A Discriminative Approach for Unsupervised Clustering of DNA Sequence Motifs

por Stegmaier, Philip, Kel, Alexander, Wingender, Edgar, Borlak, Jürgen
Publicado 2013

Short sequence motifs, overrepresented in mammalian conserved non-coding sequences

por Minovitsky, Simon, Stegmaier, Philip, Kel, Alexander, Kondrashov, Alexey S, Dubchak, Inna
Publicado 2007

GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments

por Yevshin, Ivan, Sharipov, Ruslan, Valeev, Tagir, Kel, Alexander, Kolpakov, Fedor
Publicado 2017

IGFBP2 Is a Potential Master Regulator Driving the Dysregulated Gene Network Responsible for Short Survival in Glioblastoma Multiforme

por Kalya, Manasa, Kel, Alexander, Wlochowitz, Darius, Wingender, Edgar, Beißbarth, Tim
Publicado 2021

TiProD: the Tissue-specific Promoter Database

por Chen, Xin, Wu, Jian-min, Hornischer, Klaus, Kel, Alexander, Wingender, Edgar
Publicado 2006

Genome wide prediction of HNF4α functional binding sites by the use of local and global sequence context

por Kel, Alexander E, Niehof, Monika, Matys, Volker, Zemlin, Rüdiger, Borlak, Jürgen
Publicado 2008

Molecular mechanistic associations of human diseases

por Stegmaier, Philip, Krull, Mathias, Voss, Nico, Kel, Alexander E, Wingender, Edgar
Publicado 2010

“Upstream Analysis”: An Integrated Promoter-Pathway Analysis Approach to Causal Interpretation of Microarray Data

por Koschmann, Jeannette, Bhar, Anirban, Stegmaier, Philip, Kel, Alexander E., Wingender, Edgar
Publicado 2015

Nucleotide patterns aiding in prediction of eukaryotic promoters

por Triska, Martin, Solovyev, Victor, Baranova, Ancha, Kel, Alexander, Tatarinova, Tatiana V.
Publicado 2017

Advanced Computational Biology Methods Identify Molecular Switches for Malignancy in an EGF Mouse Model of Liver Cancer

por Stegmaier, Philip, Voss, Nico, Meier, Tatiana, Kel, Alexander, Wingender, Edgar, Borlak, Juergen
Publicado 2011

Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates

por Sobolev, Boris, Filimonov, Dmitry, Lagunin, Alexey, Zakharov, Alexey, Koborova, Olga, Kel, Alexander, Poroikov, Vladimir
Publicado 2010

CYCLONET—an integrated database on cell cycle regulation and carcinogenesis

por Kolpakov, Fedor, Poroikov, Vladimir, Sharipov, Ruslan, Kondrakhin, Yury, Zakharov, Alexey, Lagunin, Alexey, Milanesi, Luciano, Kel, Alexander
Publicado 2007

Phenotypic selection through cell death: stochastic modelling of O-6-methylguanine-DNA methyltransferase dynamics

por Lasri, Ayoub, Juric, Viktorija, Verreault, Maité, Bielle, Franck, Idbaih, Ahmed, Kel, Alexander, Murphy, Brona, Sturrock, Marc
Publicado 2020

FeatureScan: revealing property-dependent similarity of nucleotide sequences

por Deyneko, Igor V., Bredohl, Björn, Wesely, Daniel, Kalybaeva, Yulia M., Kel, Alexander E., Blöcker, Helmut, Kauer, Gerhard
Publicado 2006

TRANSPATH(®)—A High Quality Database Focused on Signal Transduction

por Choi, Claudia, Krull, Mathias, Kel, Alexander, Kel-Margoulis, Olga, Pistor, Susanne, Potapov, Anatolij, Voss, Nico, Wingender, Edgar
Publicado 2004

MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters

por Deyneko, Igor V, Kel, Alexander E, Kel-Margoulis, Olga V, Deineko, Elena V, Wingender, Edgar, Weiss, Siegfried
Publicado 2013

Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information

por Masseroli, Marco, Mons, Barend, Bongcam-Rudloff, Erik, Ceri, Stefano, Kel, Alexander, Rechenmann, François, Lisacek, Frederique, Romano, Paolo
Publicado 2014

Multi-omics “upstream analysis” of regulatory genomic regions helps identifying targets against methotrexate resistance of colon cancer

por Kel, Alexander E., Stegmaier, Philip, Valeev, Tagir, Koschmann, Jeannette, Poroikov, Vladimir, Kel-Margoulis, Olga V., Wingender, Edgar
Publicado 2016