Finding the Right Questions: Exploratory Pathway Analysis to Enhance Biological Discovery in Large Datasets

por Kelder, Thomas, Conklin, Bruce R., Evelo, Chris T., Pico, Alexander R.
Publicado 2010

CyTargetLinker: A Cytoscape App to Integrate Regulatory Interactions in Network Analysis

por Kutmon, Martina, Kelder, Thomas, Mandaviya, Pooja, Evelo, Chris T. A., Coort, Susan L.
Publicado 2013

cyNeo4j: connecting Neo4j and Cytoscape

por Summer, Georg, Kelder, Thomas, Ono, Keiichiro, Radonjic, Marijana, Heymans, Stephane, Demchak, Barry
Publicado 2015

Exploring pathway interactions in insulin resistant mouse liver

por Kelder, Thomas, Eijssen, Lars, Kleemann, Robert, van Erk, Marjan, Kooistra, Teake, Evelo, Chris
Publicado 2011

Network signatures link hepatic effects of anti-diabetic interventions with systemic disease parameters

por Kelder, Thomas, Verschuren, Lars, van Ommen, Ben, van Gool, Alain J, Radonjic, Marijana
Publicado 2014

A user-friendly workflow for analysis of Illumina gene expression bead array data available at the arrayanalysis.org portal

por Eijssen, Lars M.T., Goelela, Varshna S., Kelder, Thomas, Adriaens, Michiel E., Evelo, Chris T., Radonjic, Marijana
Publicado 2015

WikiPathways: Pathway Editing for the People

por Pico, Alexander R, Kelder, Thomas, van Iersel, Martijn P, Hanspers, Kristina, Conklin, Bruce R, Evelo, Chris
Publicado 2008

Mining Biological Pathways Using WikiPathways Web Services

por Kelder, Thomas, Pico, Alexander R., Hanspers, Kristina, van Iersel, Martijn P., Evelo, Chris, Conklin, Bruce R.
Publicado 2009

PathVisio 3: An Extendable Pathway Analysis Toolbox

por Kutmon, Martina, van Iersel, Martijn P., Bohler, Anwesha, Kelder, Thomas, Nunes, Nuno, Pico, Alexander R., Evelo, Chris T.
Publicado 2015

Drugs that reverse disease transcriptomic signatures are more effective in a mouse model of dyslipidemia

por Wagner, Allon, Cohen, Noa, Kelder, Thomas, Amit, Uri, Liebman, Elad, Steinberg, David M, Radonjic, Marijana, Ruppin, Eytan
Publicado 2015

Presenting and exploring biological pathways with PathVisio

por van Iersel, Martijn P, Kelder, Thomas, Pico, Alexander R, Hanspers, Kristina, Coort, Susan, Conklin, Bruce R, Evelo, Chris
Publicado 2008

WikiPathways: building research communities on biological pathways

por Kelder, Thomas, van Iersel, Martijn P., Hanspers, Kristina, Kutmon, Martina, Conklin, Bruce R., Evelo, Chris T., Pico, Alexander R.
Publicado 2012

A systems biology approach to understand the pathophysiological mechanisms of cardiac pathological hypertrophy associated with rosiglitazone

por Verschuren, Lars, Wielinga, Peter Y, Kelder, Thomas, Radonjic, Marijana, Salic, Kanita, Kleemann, Robert, van Ommen, Ben, Kooistra, Teake
Publicado 2014

Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet

por Derous, Davina, Kelder, Thomas, van Schothorst, Evert M., van Erk, Marjan, Voigt, Anja, Klaus, Susanne, Keijer, Jaap, Radonjic, Marijana
Publicado 2015

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

por van Iersel, Martijn P, Pico, Alexander R, Kelder, Thomas, Gao, Jianjiong, Ho, Isaac, Hanspers, Kristina, Conklin, Bruce R, Evelo, Chris T
Publicado 2010

A Combined Transcriptomics and Lipidomics Analysis of Subcutaneous, Epididymal and Mesenteric Adipose Tissue Reveals Marked Functional Differences

por Caesar, Robert, Manieri, Monia, Kelder, Thomas, Boekschoten, Mark, Evelo, Chris, Müller, Michael, Kooistra, Teake, Cinti, Saverio, Kleemann, Robert, Drevon, Christian A.
Publicado 2010

Coordinated and Interactive Expression of Genes of Lipid Metabolism and Inflammation in Adipose Tissue and Liver during Metabolic Overload

por Liang, Wen, Tonini, Giulia, Mulder, Petra, Kelder, Thomas, van Erk, Marjan, van den Hoek, Anita M., Mariman, Rob, Wielinga, Peter Y., Baccini, Michela, Kooistra, Teake, Biggeri, Annibale, Kleemann, Robert
Publicado 2013

Differential Effects of Drug Interventions and Dietary Lifestyle in Developing Type 2 Diabetes and Complications: A Systems Biology Analysis in LDLr−/− Mice

por Radonjic, Marijana, Wielinga, Peter Y., Wopereis, Suzan, Kelder, Thomas, Goelela, Varshna S., Verschuren, Lars, Toet, Karin, van Duyvenvoorde, Wim, van der Werff van der Vat, Bianca, Stroeve, Johanna H. M., Cnubben, Nicole, Kooistra, Teake, van Ommen, Ben, Kleemann, Robert
Publicado 2013

Time-Resolved and Tissue-Specific Systems Analysis of the Pathogenesis of Insulin Resistance

por Kleemann, Robert, van Erk, Marjan, Verschuren, Lars, van den Hoek, Anita M., Koek, Maud, Wielinga, Peter Y., Jie, Annie, Pellis, Linette, Bobeldijk-Pastorova, Ivana, Kelder, Thomas, Toet, Karin, Wopereis, Suzan, Cnubben, Nicole, Evelo, Chris, van Ommen, Ben, Kooistra, Teake
Publicado 2010

White adipose tissue reference network: a knowledge resource for exploring health-relevant relations

por Kelder, Thomas, Summer, Georg, Caspers, Martien, van Schothorst, Evert M., Keijer, Jaap, Duivenvoorde, Loes, Klaus, Susanne, Voigt, Anja, Bohnert, Laura, Pico, Catalina, Palou, Andreu, Bonet, M. Luisa, Dembinska-Kiec, Aldona, Malczewska-Malec, Malgorzata, Kieć-Wilk, Beata, del Bas, Josep M., Caimari, Antoni, Arola, Lluis, van Erk, Marjan, van Ommen, Ben, Radonjic, Marijana
Publicado 2014