Dozer: Debiased personalized gene co-expression networks for population-scale scRNA-seq data

por Lu, Shan, Keleş, Sündüz
Publicado 2023

Debiased personalized gene coexpression networks for population-scale scRNA-seq data

por Lu, Shan, Keleş, Sündüz
Publicado 2023

Sparse partial least squares regression for simultaneous dimension reduction and variable selection

por Chun, Hyonho, Keleş, Sündüz
Publicado 2010

Normalization of ChIP-seq data with control

por Liang, Kun, Keleş, Sündüz
Publicado 2012

SURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins

por Chen, Fan, Keleş, Sündüz
Publicado 2020

FreeHi-C simulates high fidelity Hi-C data for benchmarking and data augmentation

por Zheng, Ye, Keleş, Sündüz
Publicado 2019

Joint tensor modeling of single cell 3D genome and epigenetic data with Muscle

por Park, Kwangmoon, Keleş, Sündüz
Publicado 2023

AdaLiftOver: high-resolution identification of orthologous regulatory elements with Adaptive liftOver

por Dong, Chenyang, Shen, Siqi, Keleş, Sündüz
Publicado 2023

Generative modeling of multi-mapping reads with mHi-C advances analysis of Hi-C studies

por Zheng, Ye, Ay, Ferhat, Keles, Sunduz
Publicado 2019

Normalization and de-noising of single-cell Hi-C data with BandNorm and scVI-3D

por Zheng, Ye, Shen, Siqi, Keleş, Sündüz
Publicado 2022

A Phylogenetic Mixture Model for the Evolution of Gene Expression

por Eng, Kevin H., Bravo, Héctor Corrada, Keleş, Sündüz
Publicado 2009

Data exploration, quality control and statistical analysis of ChIP-exo/nexus experiments

por Welch, Rene, Chung, Dongjun, Grass, Jeffrey, Landick, Robert, Keleş, Sündüz
Publicado 2017

CSI-Tree: a regression tree approach for modeling binding properties of DNA-binding molecules based on cognate site identification (CSI) data

por Keleş, Sündüz, Warren, Christopher L., Carlson, Clayton D., Ansari, Aseem Z.
Publicado 2008

Multivariate Boosting for Integrative Analysis of High-Dimensional Cancer Genomic Data

por Xiong, Lie, Kuan, Pei-Fen, Tian, Jianan, Keles, Sunduz, Wang, Sijian
Publicado 2015

Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq

por Liu, Peng, Sanalkumar, Rajendran, Bresnick, Emery H., Keleş, Sündüz, Dewey, Colin N.
Publicado 2016

jMOSAiCS: joint analysis of multiple ChIP-seq datasets

por Zeng, Xin, Sanalkumar, Rajendran, Bresnick, Emery H, Li, Hongda, Chang, Qiang, Keleş, Sündüz
Publicado 2013

Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection

por Zhang, Qi, Zeng, Xin, Younkin, Sam, Kawli, Trupti, Snyder, Michael P., Keleş, Sündüz
Publicado 2016

PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments

por Liu, Peng, Soukup, Alexandra A., Bresnick, Emery H., Dewey, Colin N., Keleş, Sündüz
Publicado 2020

MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing

por Şapcı, Ali Osman Berk, Lu, Shan, Yan, Shuchen, Ay, Ferhat, Tastan, Oznur, Keleş, Sündüz
Publicado 2023

dPeak: High Resolution Identification of Transcription Factor Binding Sites from PET and SET ChIP-Seq Data

por Chung, Dongjun, Park, Dan, Myers, Kevin, Grass, Jeffrey, Kiley, Patricia, Landick, Robert, Keleş, Sündüz
Publicado 2013