Preparing glycomics data for robust statistical analysis with GlyCompareCT

por Zhang, Yujie, Krishnan, Sridevi, Bao, Bokan, Chiang, Austin W.T., Sorrentino, James T., Schinn, Song-Min, Kellman, Benjamin P., Lewis, Nathan E.
Publicado 2023

A perturbed gene network containing PI3K/AKT, RAS/ERK, WNT/β-catenin pathways in leukocytes is linked to ASD genetics and symptom severity

por Gazestani, Vahid H., Pramparo, Tiziano, Nalabolu, Srinivasa, Kellman, Benjamin P., Murray, Sarah, Lopez, Linda, Pierce, Karen, Courchesne, Eric, Lewis, Nathan E.
Publicado 2019

Optimization of carbon and energy utilization through differential translational efficiency

por Al-Bassam, Mahmoud M., Kim, Ji-Nu, Zaramela, Livia S., Kellman, Benjamin P., Zuniga, Cristal, Wozniak, Jacob M., Gonzalez, David J., Zengler, Karsten
Publicado 2018

Systems glycobiology for discovering drug targets, biomarkers, and rational designs for glyco-immunotherapy

por Chiang, Austin W. T., Baghdassarian, Hratch M., Kellman, Benjamin P., Bao, Bokan, Sorrentino, James T., Liang, Chenguang, Kuo, Chih-Chung, Masson, Helen O., Lewis, Nathan E.
Publicado 2021

Evolution of the exclusively human pathogen Neisseria gonorrhoeae: Human‐specific engagement of immunoregulatory Siglecs

por Landig, Corinna S., Hazel, Ashley, Kellman, Benjamin P., Fong, Jerry J., Schwarz, Flavio, Agarwal, Sarika, Varki, Nissi, Massari, Paola, Lewis, Nathan E., Ram, Sanjay, Varki, Ajit
Publicado 2019

Correcting for sparsity and interdependence in glycomics by accounting for glycan biosynthesis

por Bao, Bokan, Kellman, Benjamin P., Chiang, Austin W. T., Zhang, Yujie, Sorrentino, James T., York, Austin K., Mohammad, Mahmoud A., Haymond, Morey W., Bode, Lars, Lewis, Nathan E.
Publicado 2021

Multiple freeze-thaw cycles lead to a loss of consistency in poly(A)-enriched RNA sequencing

por Kellman, Benjamin P., Baghdassarian, Hratch M., Pramparo, Tiziano, Shamie, Isaac, Gazestani, Vahid, Begzati, Arjana, Li, Shangzhong, Nalabolu, Srinivasa, Murray, Sarah, Lopez, Linda, Pierce, Karen, Courchesne, Eric, Lewis, Nathan E.
Publicado 2021

ImmCellFie: A user-friendly web-based platform to infer metabolic function from omics data

por Masson, Helen O., Borland, David, Reilly, Jason, Telleria, Adrian, Shrivastava, Shalki, Watson, Matt, Bustillos, Luthfi, Li, Zerong, Capps, Laura, Kellman, Benjamin P., King, Zachary A., Richelle, Anne, Lewis, Nathan E., Robasky, Kimberly
Publicado 2023

404. Impact of cross-coronavirus humoral immunity in post-acute sequelae of COVID-19 in systemic autoimmune rheumatic diseases patients

por Herman, Jonathan, Atyeo, Caroline, Zur, Yonatan, Cook, Claire, Patel, Naomi, Vanni, Kathleen, Kowalski, Emily, Qian, Grace, Srivatsan, Shruthi, Shadick, Nancy, Rao, Deepak, Kellman, Benjamin, Mann, Colin, Lauffenburger, Douglas A, Wallace, Zachary, Sparks, Jeffrey, Alter, Galit
Publicado 2023

Combating viral contaminants in CHO cells by engineering innate immunity

por Chiang, Austin W. T., Li, Shangzhong, Kellman, Benjamin P., Chattopadhyay, Gouri, Zhang, Yaqin, Kuo, Chih-Chung, Gutierrez, Jahir M., Ghazi, Faezeh, Schmeisser, Hana, Ménard, Patrice, Bjørn, Sara Petersen, Voldborg, Bjørn G., Rosenberg, Amy S., Puig, Montserrat, Lewis, Nathan E.
Publicado 2019

Virus-Receptor Interactions of Glycosylated SARS-CoV-2 Spike and Human ACE2 Receptor

por Zhao, Peng, Praissman, Jeremy L., Grant, Oliver C., Cai, Yongfei, Xiao, Tianshu, Rosenbalm, Katelyn E., Aoki, Kazuhiro, Kellman, Benjamin P., Bridger, Robert, Barouch, Dan H., Brindley, Melinda A., Lewis, Nathan E., Tiemeyer, Michael, Chen, Bing, Woods, Robert J., Wells, Lance
Publicado 2020

Virus-Receptor Interactions of Glycosylated SARS-CoV-2 Spike and Human ACE2 Receptor

por Zhao, Peng, Praissman, Jeremy L., Grant, Oliver C., Cai, Yongfei, Xiao, Tianshu, Rosenbalm, Katelyn E., Aoki, Kazuhiro, Kellman, Benjamin P., Bridger, Robert, Barouch, Dan H., Brindley, Melinda A., Lewis, Nathan E., Tiemeyer, Michael, Chen, Bing, Woods, Robert J., Wells, Lance
Publicado 2020

Elucidating Human Milk Oligosaccharide biosynthetic genes through network-based multi-omics integration

por Kellman, Benjamin P., Richelle, Anne, Yang, Jeong-Yeh, Chapla, Digantkumar, Chiang, Austin W. T., Najera, Julia A., Liang, Chenguang, Fürst, Annalee, Bao, Bokan, Koga, Natalia, Mohammad, Mahmoud A., Bruntse, Anders Bech, Haymond, Morey W., Moremen, Kelley W., Bode, Lars, Lewis, Nathan E.
Publicado 2022

Model-based assessment of mammalian cell metabolic functionalities using omics data

por Richelle, Anne, Kellman, Benjamin P., Wenzel, Alexander T., Chiang, Austin W.T., Reagan, Tyler, Gutierrez, Jahir M., Joshi, Chintan, Li, Shangzhong, Liu, Joanne K., Masson, Helen, Lee, Jooyong, Li, Zerong, Heirendt, Laurent, Trefois, Christophe, Juarez, Edwin F., Bath, Tyler, Borland, David, Mesirov, Jill P., Robasky, Kimberly, Lewis, Nathan E.
Publicado 2021

A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR)

por Kellman, Benjamin P, Zhang, Yujie, Logomasini, Emma, Meinhardt, Eric, Godinez-Macias, Karla P, Chiang, Austin W T, Sorrentino, James T, Liang, Chenguang, Bao, Bokan, Zhou, Yusen, Akase, Sachiko, Sogabe, Isami, Kouka, Thukaa, Winzeler, Elizabeth A, Wilson, Iain B H, Campbell, Matthew P, Neelamegham, Sriram, Krambeck, Frederick J, Aoki-Kinoshita, Kiyoko F, Lewis, Nathan E
Publicado 2020

NCBI’s Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements

por Connor, Ryan, Brister, Rodney, Buchmann, Jan P., Deboutte, Ward, Edwards, Rob, Martí-Carreras, Joan, Tisza, Mike, Zalunin, Vadim, Andrade-Martínez, Juan, Cantu, Adrian, D’Amour, Michael, Efremov, Alexandre, Fleischmann, Lydia, Forero-Junco, Laura, Garmaeva, Sanzhima, Giluso, Melissa, Glickman, Cody, Henderson, Margaret, Kellman, Benjamin, Kristensen, David, Leubsdorf, Carl, Levi, Kyle, Levi, Shane, Pakala, Suman, Peddu, Vikas, Ponsero, Alise, Ribeiro, Eldred, Roy, Farrah, Rutter, Lindsay, Saha, Surya, Shakya, Migun, Shean, Ryan, Miller, Matthew, Tully, Benjamin, Turkington, Christopher, Youens-Clark, Ken, Vanmechelen, Bert, Busby, Ben
Publicado 2019

SARS-CoV-2 Infection Depends on Cellular Heparan Sulfate and ACE2

por Clausen, Thomas Mandel, Sandoval, Daniel R., Spliid, Charlotte B., Pihl, Jessica, Perrett, Hailee R., Painter, Chelsea D., Narayanan, Anoop, Majowicz, Sydney A., Kwong, Elizabeth M., McVicar, Rachael N., Thacker, Bryan E., Glass, Charles A., Yang, Zhang, Torres, Jonathan L., Golden, Gregory J., Bartels, Phillip L., Porell, Ryan N., Garretson, Aaron F., Laubach, Logan, Feldman, Jared, Yin, Xin, Pu, Yuan, Hauser, Blake M., Caradonna, Timothy M., Kellman, Benjamin P., Martino, Cameron, Gordts, Philip L.S.M., Chanda, Sumit K., Schmidt, Aaron G., Godula, Kamil, Leibel, Sandra L., Jose, Joyce, Corbett, Kevin D., Ward, Andrew B., Carlin, Aaron F., Esko, Jeffrey D.
Publicado 2020