Integrated Computational Pipeline for Single-Cell Genomic Profiling

por Chorbadjiev, Lubomir, Kendall, Jude, Alexander, Joan, Zhygulin, Viacheslav, Song, Junyan, Wigler, Michael, Krasnitz, Alexander
Publicado 2020

Interactive analysis and assessment of single-cell copy-number variations

por Garvin, Tyler, Aboukhalil, Robert, Kendall, Jude, Baslan, Timour, Atwal, Gurinder S., Hicks, James, Wigler, Michael, Schatz, Michael C.
Publicado 2015

SMASH, a fragmentation and sequencing method for genomic copy number analysis

por Wang, Zihua, Andrews, Peter, Kendall, Jude, Ma, Beicong, Hakker, Inessa, Rodgers, Linda, Ronemus, Michael, Wigler, Michael, Levy, Dan
Publicado 2016

Updates to the RMAP short-read mapping software

por Smith, Andrew D., Chung, Wen-Yu, Hodges, Emily, Kendall, Jude, Hannon, Greg, Hicks, James, Xuan, Zhenyu, Zhang, Michael Q.
Publicado 2009

Rapid Phenotypic and Genomic Change in Response to Therapeutic Pressure in Prostate Cancer Inferred by High Content Analysis of Single Circulating Tumor Cells

por Dago, Angel E., Stepansky, Asya, Carlsson, Anders, Luttgen, Madelyn, Kendall, Jude, Baslan, Timour, Kolatkar, Anand, Wigler, Michael, Bethel, Kelly, Gross, Mitchell E., Hicks, James, Kuhn, Peter
Publicado 2014

Multiplex accurate sensitive quantitation (MASQ) with application to minimal residual disease in acute myeloid leukemia

por Moffitt, Andrea B, Spector, Mona S, Andrews, Peter, Kendall, Jude, Alexander, Joan, Stepansky, Asya, Ma, BeiCong, Kolitz, Jonathan, Chiorazzi, Nicholas, Allen, Steven L, Krasnitz, Alex, Wigler, Michael, Levy, Dan, Wang, Zihua
Publicado 2020

Methylation detection oligonucleotide microarray analysis: a high-resolution method for detection of CpG island methylation

por Kamalakaran, Sitharthan, Kendall, Jude, Zhao, Xiaoyue, Tang, Chunlao, Khan, Sohail, Ravi, Kandasamy, Auletta, Theresa, Riggs, Michael, Wang, Yun, Helland, Åslaug, Naume, Bjørn, Dimitrova, Nevenka, Børresen-Dale, Anne-Lise, Hicks, Jim, Lucito, Robert
Publicado 2009

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA

por Regulski, Michael, Lu, Zhenyuan, Kendall, Jude, Donoghue, Mark T.A., Reinders, Jon, Llaca, Victor, Deschamps, Stephane, Smith, Andrew, Levy, Dan, McCombie, W. Richard, Tingey, Scott, Rafalski, Antoni, Hicks, James, Ware, Doreen, Martienssen, Robert A.
Publicado 2013

Parity-induced changes to mammary epithelial cells control NKT cell expansion and mammary oncogenesis

por Somasundara, Amritha Varshini Hanasoge, Moss, Matthew A., Feigman, Mary J., Chen, Chen, Cyrill, Samantha L., Ciccone, Michael F., Trousdell, Marygrace C., Vollbrecht, Macy, Li, Siran, Kendall, Jude, Beyaz, Semir, Wilkinson, John E., dos Santos, Camila O.
Publicado 2021

Optimizing sparse sequencing of single cells for highly multiplex copy number profiling

por Baslan, Timour, Kendall, Jude, Ward, Brian, Cox, Hilary, Leotta, Anthony, Rodgers, Linda, Riggs, Michael, D'Italia, Sean, Sun, Guoli, Yong, Mao, Miskimen, Kristy, Gilmore, Hannah, Saborowski, Michael, Dimitrova, Nevenka, Krasnitz, Alexander, Harris, Lyndsay, Wigler, Michael, Hicks, James
Publicado 2015

Copolymerization of single-cell nucleic acids into balls of acrylamide gel

por Li, Siran, Kendall, Jude, Park, Sarah, Wang, Zihua, Alexander, Joan, Moffitt, Andrea, Ranade, Nissim, Danyko, Cassidy, Gegenhuber, Bruno, Fischer, Stephan, Robinson, Brian D., Lepor, Herbert, Tollkuhn, Jessica, Gillis, Jesse, Brouzes, Eric, Krasnitz, Alex, Levy, Dan, Wigler, Michael
Publicado 2020

TGF-β reduces DNA ds-break repair mechanisms to heighten genetic diversity and adaptability of CD44+/CD24− cancer cells

por Pal, Debjani, Pertot, Anja, Shirole, Nitin H, Yao, Zhan, Anaparthy, Naishitha, Garvin, Tyler, Cox, Hilary, Chang, Kenneth, Rollins, Fred, Kendall, Jude, Edwards, Leyla, Singh, Vijay A, Stone, Gary C, Schatz, Michael C, Hicks, James, Hannon, Gregory J, Sordella, Raffaella
Publicado 2017

Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing

por Baslan, Timour, Kendall, Jude, Volyanskyy, Konstantin, McNamara, Katherine, Cox, Hilary, D'Italia, Sean, Ambrosio, Frank, Riggs, Michael, Rodgers, Linda, Leotta, Anthony, Song, Junyan, Mao, Yong, Wu, Jie, Shah, Ronak, Gularte-Mérida, Rodrigo, Chadalavada, Kalyani, Nanjangud, Gouri, Varadan, Vinay, Gordon, Assaf, Curtis, Christina, Krasnitz, Alex, Dimitrova, Nevenka, Harris, Lyndsay, Wigler, Michael, Hicks, James
Publicado 2020

Whole-genome single-cell copy number profiling from formalin-fixed paraffin-embedded samples

por Martelotto, Luciano G, Baslan, Timour, Kendall, Jude, Geyer, Felipe C, Burke, Kathleen A, Spraggon, Lee, Piscuoglio, Salvatore, Chadalavada, Kalyani, Nanjangud, Gouri, Ng, Charlotte KY, Moody, Pamela, D’Italia, Sean, Rodgers, Linda, Cox, Hilary, Paula, Arnaud da Cruz, Stepansky, Asya, Schizas, Michail, Wen, Hannah Y, King, Tari A, Norton, Larry, Weigelt, Britta, Hicks, James B, Reis-Filho, Jorge S
Publicado 2017

Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation

por Shi, Junwei, Whyte, Warren A., Zepeda-Mendoza, Cinthya J., Milazzo, Joseph P., Shen, Chen, Roe, Jae-Seok, Minder, Jessica L., Mercan, Fatih, Wang, Eric, Eckersley-Maslin, Melanie A., Campbell, Amy E., Kawaoka, Shinpei, Shareef, Sarah, Zhu, Zhu, Kendall, Jude, Muhar, Matthias, Haslinger, Christian, Yu, Ming, Roeder, Robert G., Wigler, Michael H., Blobel, Gerd A., Zuber, Johannes, Spector, David L., Young, Richard A., Vakoc, Christopher R.
Publicado 2013

Ordered and deterministic cancer genome evolution after p53 loss

por Baslan, Timour, Morris, John P., Zhao, Zhen, Reyes, Jose, Ho, Yu-Jui, Tsanov, Kaloyan M., Bermeo, Jonathan, Tian, Sha, Zhang, Sean, Askan, Gokce, Yavas, Aslihan, Lecomte, Nicolas, Erakky, Amanda, Varghese, Anna M., Zhang, Amy, Kendall, Jude, Ghiban, Elena, Chorbadjiev, Lubomir, Wu, Jie, Dimitrova, Nevenka, Chadalavada, Kalyani, Nanjangud, Gouri J., Bandlamudi, Chaitanya, Gong, Yixiao, Donoghue, Mark T. A., Socci, Nicholas D., Krasnitz, Alex, Notta, Faiyaz, Leach, Steve D., Iacobuzio-Donahue, Christine A., Lowe, Scott W.
Publicado 2022

Microduplications of 16p11.2 are Associated with Schizophrenia

por McCarthy, Shane, Makarov, Vladimir, Kirov, George, Addington, Anjene, McClellan, Jon, Yoon, Seungtai, Perkins, Dianna, Dickel, Diane E., Kusenda, Mary, Krastoshevsky, Olga, Krause, Verena, Kumar, Ravinesh A., Grozeva, Detelina, Malhotra, Dheeraj, Walsh, Tom, Zackai, Elaine H., Kaplan, Paige, Ganesh, Jaya, Krantz, Ian D., Spinner, Nancy B., Roccanova, Patricia, Bhandari, Abhishek, Pavon, Kevin, Lakshmi, B., Leotta, Anthony, Kendall, Jude, Lee, Yoon-ha, Vacic, Vladimir, Gary, Sydney, Iakoucheva, Lilia, Crow, Timothy J., Christian, Susan L., Lieberman, Jeffrey, Stroup, Scott, Lehtimäki, Terho, Puura, Kaija, Haldeman-Englert, Chad, Pearl, Justin, Goodell, Meredith, Willour, Virginia L., DeRosse, Pamela, Steele, Jo, Kassem, Layla, Wolff, Jessica, Chitkara, Nisha, McMahon, Francis J., Malhotra, Anil K., Potash, James B., Schulze, Thomas G., Nöthen, Markus M., Cichon, Sven, Rietschel, Marcella, Leibenluft, Ellen, Kustanovich, Vlad, Lajonchere, Clara M., Sutcliffe, James S., Skuse, David, Gill, Michael, Gallagher, Louise, Mendell, Nancy R., Craddock, Nick, Owen, Michael J., O’Donovan, Michael C., Shaikh, Tamim H., Susser, Ezra, DeLisi, Lynn E., Sullivan, Patrick F., Deutsch, Curtis K., Rapoport, Judith, Levy, Deborah L., King, Mary-Claire, Sebat, Jonathan
Publicado 2009