The UCSC genome browser and associated tools

por Kuhn, Robert M., Haussler, David, Kent, W. James
Publicado 2013

Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false positive alignments

por Miga, Karen H., Eisenhart, Christopher, Kent, W. James
Publicado 2015

Retrocopy contributions to the evolution of the human genome

por Baertsch, Robert, Diekhans, Mark, Kent, W James, Haussler, David, Brosius, Jürgen
Publicado 2008

Hotspots of mammalian chromosomal evolution

por Bailey, Jeffrey A, Baertsch, Robert, Kent, W James, Haussler, David, Eichler, Evan E
Publicado 2004

Centromere reference models for human chromosomes X and Y satellite arrays

por Miga, Karen H., Newton, Yulia, Jain, Miten, Altemose, Nicolas, Willard, Huntington F., Kent, W. James
Publicado 2014

The UCSC Proteome Browser

por Hsu, Fan, Pringle, Tom H., Kuhn, Robert M., Karolchik, Donna, Diekhans, Mark, Haussler, David, Kent, W. James
Publicado 2005

The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families

por Fernandes, Jason D., Zamudio-Hurtado, Armando, Clawson, Hiram, Kent, W. James, Haussler, David, Salama, Sofie R., Haeussler, Maximilian
Publicado 2020

Variation resources at UC Santa Cruz

por Thomas, Daryl J., Trumbower, Heather, Kern, Andrew D., Rhead, Brooke L., Kuhn, Robert M., Haussler, David, Kent, W. James
Publicado 2007

Navigating protected genomics data with UCSC Genome Browser in a Box

por Haeussler, Maximilian, Raney, Brian J., Hinrichs, Angie S., Clawson, Hiram, Zweig, Ann S., Karolchik, Donna, Casper, Jonathan, Speir, Matthew L., Haussler, David, Kent, W. James
Publicado 2015

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser

por Raney, Brian J., Dreszer, Timothy R., Barber, Galt P., Clawson, Hiram, Fujita, Pauline A., Wang, Ting, Nguyen, Ngan, Paten, Benedict, Zweig, Ann S., Karolchik, Donna, Kent, W. James
Publicado 2014

UCSC Data Integrator and Variant Annotation Integrator

por Hinrichs, Angie S., Raney, Brian J., Speir, Matthew L., Rhead, Brooke, Casper, Jonathan, Karolchik, Donna, Kuhn, Robert M., Rosenbloom, Kate R., Zweig, Ann S., Haussler, David, Kent, W. James
Publicado 2016

UCSC Cell Browser: visualize your single-cell data

por Speir, Matthew L, Bhaduri, Aparna, Markov, Nikolay S, Moreno, Pablo, Nowakowski, Tomasz J, Papatheodorou, Irene, Pollen, Alex A, Raney, Brian J, Seninge, Lucas, Kent, W James, Haeussler, Maximilian
Publicado 2021

The UCSC Ebola Genome Portal

por Haeussler, Maximilian, Karolchik, Donna, Clawson, Hiram, Raney, Brian J, Rosenbloom, Kate R., Fujita, Pauline A., Hinrichs, Angie S., Speir, Matthew L, Eisenhart, Chris, Zweig, Ann S., Haussler, David, Kent, W. James
Publicado 2014

The UCSC cancer genomics browser: update 2011

por Sanborn, J. Zachary, Benz, Stephen C., Craft, Brian, Szeto, Christopher, Kober, Kord M., Meyer, Laurence, Vaske, Charles J., Goldman, Mary, Smith, Kayla E., Kuhn, Robert M., Karolchik, Donna, Kent, W. James, Stuart, Joshua M., Haussler, David, Zhu, Jingchun
Publicado 2011

The ENCODE Project at UC Santa Cruz

por Thomas, Daryl J., Rosenbloom, Kate R., Clawson, Hiram, Hinrichs, Angie S., Trumbower, Heather, Raney, Brian J., Karolchik, Donna, Barber, Galt P., Harte, Rachel A., Hillman-Jackson, Jennifer, Kuhn, Robert M., Rhead, Brooke L., Smith, Kayla E., Thakkapallayil, Archana, Zweig, Ann S., Haussler, David, Kent, W. James
Publicado 2007

ENCODE whole-genome data in the UCSC Genome Browser

por Rosenbloom, Kate R., Dreszer, Timothy R., Pheasant, Michael, Barber, Galt P., Meyer, Laurence R., Pohl, Andy, Raney, Brian J., Wang, Ting, Hinrichs, Angie S., Zweig, Ann S., Fujita, Pauline A., Learned, Katrina, Rhead, Brooke, Smith, Kayla E., Kuhn, Robert M., Karolchik, Donna, Haussler, David, Kent, W. James
Publicado 2010

The UCSC Genome Browser database: 2019 update

por Haeussler, Maximilian, Zweig, Ann S, Tyner, Cath, Speir, Matthew L, Rosenbloom, Kate R, Raney, Brian J, Lee, Christopher M, Lee, Brian T, Hinrichs, Angie S, Gonzalez, Jairo Navarro, Gibson, David, Diekhans, Mark, Clawson, Hiram, Casper, Jonathan, Barber, Galt P, Haussler, David, Kuhn, Robert M, Kent, W James
Publicado 2019

The UCSC SARS-CoV-2 Genome Browser

por Fernandes, Jason D., Hinrichs, Angie S., Clawson, Hiram, Gonzalez, Jairo Navarro, Lee, Brian T., Nassar, Luis R., Raney, Brian J., Rosenbloom, Kate R., Nerli, Santrupti, Rao, Arjun, Schmelter, Daniel, Zweig, Ann S., Lowe, Todd M., Ares, Manuel, Corbet-Detig, Russ, Kent, W. James, Haussler, David, Haeussler, Maximilian
Publicado 2020

Ontology application and use at the ENCODE DCC

por Malladi, Venkat S., Erickson, Drew T., Podduturi, Nikhil R., Rowe, Laurence D., Chan, Esther T., Davidson, Jean M., Hitz, Benjamin C., Ho, Marcus, Lee, Brian T., Miyasato, Stuart, Roe, Gregory R., Simison, Matt, Sloan, Cricket A., Strattan, J. Seth, Tanaka, Forrest, Kent, W. James, Cherry, J. Michael, Hong, Eurie L.
Publicado 2015

UCSC Genome Browser enters 20th year

por Lee, Christopher M, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Brian T, Nassar, Luis R, Powell, Conner C, Raney, Brian J, Rosenbloom, Kate R, Schmelter, Daniel, Speir, Matthew L, Zweig, Ann S, Haussler, David, Haeussler, Maximilian, Kuhn, Robert M, Kent, W James
Publicado 2020