Fixated on fixation: using ChIP to interrogate the dynamics of chromatin interactions

por Keren, Leeat, Segal, Eran
Publicado 2013

From genes to modules, from cells to ecosystems

por Keidar Haran, Tal, Keren, Leeat
Publicado 2022

Sequence features of yeast and human core promoters that are predictive of maximal promoter activity

por Lubliner, Shai, Keren, Leeat, Segal, Eran
Publicado 2013

A Minimalistic Resource Allocation Model to Explain Ubiquitous Increase in Protein Expression with Growth Rate

por Barenholz, Uri, Keren, Leeat, Segal, Eran, Milo, Ron
Publicado 2016

Central dogma rates and the trade-off between precision and economy in gene expression

por Hausser, Jean, Mayo, Avi, Keren, Leeat, Alon, Uri
Publicado 2019

Modeling Multiplexed Images with Spatial-LDA Reveals Novel Tissue Microenvironments

por Chen, Zhenghao, Soifer, Ilya, Hilton, Hugo, Keren, Leeat, Jojic, Vladimir
Publicado 2020

CellSighter: a neural network to classify cells in highly multiplexed images

por Amitay, Yael, Bussi, Yuval, Feinstein, Ben, Bagon, Shai, Milo, Idan, Keren, Leeat
Publicado 2023

Probing the effect of promoters on noise in gene expression using thousands of designed sequences

por Sharon, Eilon, van Dijk, David, Kalma, Yael, Keren, Leeat, Manor, Ohad, Yakhini, Zohar, Segal, Eran
Publicado 2014

MAUI (MBI Analysis User Interface)—An image processing pipeline for Multiplexed Mass Based Imaging

por Baranski, Alex, Milo, Idan, Greenbaum, Shirley, Oliveria, John-Paul, Mrdjen, Dunja, Angelo, Michael, Keren, Leeat
Publicado 2021

Multiplexed imaging analysis of the tumor-immune microenvironment reveals predictors of outcome in triple-negative breast cancer

por Patwa, Aalok, Yamashita, Rikiya, Long, Jin, Risom, Tyler, Angelo, Michael, Keren, Leeat, Rubin, Daniel L.
Publicado 2021

Measurements of the Impact of 3′ End Sequences on Gene Expression Reveal Wide Range and Sequence Dependent Effects

por Shalem, Ophir, Carey, Lucas, Zeevi, Danny, Sharon, Eilon, Keren, Leeat, Weinberger, Adina, Dahan, Orna, Pilpel, Yitzhak, Segal, Eran
Publicado 2013

Noise in gene expression is coupled to growth rate

por Keren, Leeat, van Dijk, David, Weingarten-Gabbay, Shira, Davidi, Dan, Jona, Ghil, Weinberger, Adina, Milo, Ron, Segal, Eran
Publicado 2015

The total mass, number, and distribution of immune cells in the human body

por Sender, Ron, Weiss, Yarden, Navon, Yoav, Milo, Idan, Azulay, Nofar, Keren, Leeat, Fuchs, Shai, Ben-Zvi, Danny, Noor, Elad, Milo, Ron
Publicado 2023

Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters

por Sharon, Eilon, Kalma, Yael, Sharp, Ayala, Raveh-Sadka, Tali, Levo, Michal, Zeevi, Danny, Keren, Leeat, Yakhini, Zohar, Weinberger, Adina, Segal, Eran
Publicado 2012

Promoters maintain their relative activity levels under different growth conditions

por Keren, Leeat, Zackay, Ora, Lotan-Pompan, Maya, Barenholz, Uri, Dekel, Erez, Sasson, Vered, Aidelberg, Guy, Bren, Anat, Zeevi, Danny, Weinberger, Adina, Alon, Uri, Milo, Ron, Segal, Eran
Publicado 2013

Adjacent Cell Marker Lateral Spillover Compensation and Reinforcement for Multiplexed Images

por Bai, Yunhao, Zhu, Bokai, Rovira-Clave, Xavier, Chen, Han, Markovic, Maxim, Chan, Chi Ngai, Su, Tung-Hung, McIlwain, David R., Estes, Jacob D., Keren, Leeat, Nolan, Garry P., Jiang, Sizun
Publicado 2021

DestVI identifies continuums of cell types in spatial transcriptomics data

por Lopez, Romain, Li, Baoguo, Keren-Shaul, Hadas, Boyeau, Pierre, Kedmi, Merav, Pilzer, David, Jelinski, Adam, David, Eyal, Wagner, Allon, Addadi, Yoseph, Elhanani, Ofer, Fatelevich, Michal, Yankielowicz-Keren, Leeat, Golani, Ofra, Ronchese, Franca, Jordan, Michael I., Amit, Ido, Yosef, Nir
Publicado 2022

MIBI-TOF: A multiplexed imaging platform relates cellular phenotypes and tissue structure

por Keren, Leeat, Bosse, Marc, Thompson, Steve, Risom, Tyler, Vijayaragavan, Kausalia, McCaffrey, Erin, Marquez, Diana, Angoshtari, Roshan, Greenwald, Noah F., Fienberg, Harris, Wang, Jennifer, Kambham, Neeraja, Kirkwood, David, Nolan, Garry, Montine, Thomas J., Galli, Stephen J., West, Robert, Bendall, Sean C., Angelo, Michael
Publicado 2019

A spatially resolved timeline of the human maternal–fetal interface

por Greenbaum, Shirley, Averbukh, Inna, Soon, Erin, Rizzuto, Gabrielle, Baranski, Alex, Greenwald, Noah F., Kagel, Adam, Bosse, Marc, Jaswa, Eleni G., Khair, Zumana, Kwok, Shirley, Warshawsky, Shiri, Piyadasa, Hadeesha, Goldston, Mako, Spence, Angie, Miller, Geneva, Schwartz, Morgan, Graf, Will, Van Valen, David, Winn, Virginia D., Hollmann, Travis, Keren, Leeat, van de Rijn, Matt, Angelo, Michael
Publicado 2023

Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma

por Risom, Tyler, Glass, David R., Averbukh, Inna, Liu, Candace C., Baranski, Alex, Kagel, Adam, McCaffrey, Erin F., Greenwald, Noah F., Rivero-Gutiérrez, Belén, Strand, Siri H., Varma, Sushama, Kong, Alex, Keren, Leeat, Srivastava, Sucheta, Zhu, Chunfang, Khair, Zumana, Veis, Deborah J., Deschryver, Katherine, Vennam, Sujay, Maley, Carlo, Hwang, E. Shelley, Marks, Jeffrey R., Bendall, Sean C., Colditz, Graham A., West, Robert B., Angelo, Michael
Publicado 2022