Triticeae Resources in Ensembl Plants

por Bolser, Dan M., Kerhornou, Arnaud, Walts, Brandon, Kersey, Paul
Publicado 2015

Ensembl BioMarts: a hub for data retrieval across taxonomic space

por Kinsella, Rhoda J., Kähäri, Andreas, Haider, Syed, Zamora, Jorge, Proctor, Glenn, Spudich, Giulietta, Almeida-King, Jeff, Staines, Daniel, Derwent, Paul, Kerhornou, Arnaud, Kersey, Paul, Flicek, Paul
Publicado 2011

Rhea, the reaction knowledgebase in 2022

por Bansal, Parit, Morgat, Anne, Axelsen, Kristian B, Muthukrishnan, Venkatesh, Coudert, Elisabeth, Aimo, Lucila, Hyka-Nouspikel, Nevila, Gasteiger, Elisabeth, Kerhornou, Arnaud, Neto, Teresa Batista, Pozzato, Monica, Blatter, Marie-Claude, Ignatchenko, Alex, Redaschi, Nicole, Bridge, Alan
Publicado 2021

De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum

por Fox, Samuel E., Geniza, Matthew, Hanumappa, Mamatha, Naithani, Sushma, Sullivan, Chris, Preece, Justin, Tiwari, Vijay K., Elser, Justin, Leonard, Jeffrey M., Sage, Abigail, Gresham, Cathy, Kerhornou, Arnaud, Bolser, Dan, McCarthy, Fiona, Kersey, Paul, Lazo, Gerard R., Jaiswal, Pankaj
Publicado 2014

Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species

por Kersey, Paul J., Staines, Daniel M., Lawson, Daniel, Kulesha, Eugene, Derwent, Paul, Humphrey, Jay C., Hughes, Daniel S. T., Keenan, Stephan, Kerhornou, Arnaud, Koscielny, Gautier, Langridge, Nicholas, McDowall, Mark D., Megy, Karine, Maheswari, Uma, Nuhn, Michael, Paulini, Michael, Pedro, Helder, Toneva, Iliana, Wilson, Derek, Yates, Andrew, Birney, Ewan
Publicado 2012

The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants

por Crossman, Lisa C, Gould, Virginia C, Dow, J Maxwell, Vernikos, Georgios S, Okazaki, Aki, Sebaihia, Mohammed, Saunders, David, Arrowsmith, Claire, Carver, Tim, Peters, Nicholas, Adlem, Ellen, Kerhornou, Arnaud, Lord, Angela, Murphy, Lee, Seeger, Katharine, Squares, Robert, Rutter, Simon, Quail, Michael A, Rajandream, Mari-Adele, Harris, David, Churcher, Carol, Bentley, Stephen D, Parkhill, Julian, Thomson, Nicholas R, Avison, Matthew B
Publicado 2008

Gramene 2013: comparative plant genomics resources

por Monaco, Marcela K., Stein, Joshua, Naithani, Sushma, Wei, Sharon, Dharmawardhana, Palitha, Kumari, Sunita, Amarasinghe, Vindhya, Youens-Clark, Ken, Thomason, James, Preece, Justin, Pasternak, Shiran, Olson, Andrew, Jiao, Yinping, Lu, Zhenyuan, Bolser, Dan, Kerhornou, Arnaud, Staines, Dan, Walts, Brandon, Wu, Guanming, D’Eustachio, Peter, Haw, Robin, Croft, David, Kersey, Paul J., Stein, Lincoln, Jaiswal, Pankaj, Ware, Doreen
Publicado 2014

Analysis of the bread wheat genome using whole genome shotgun sequencing

por Brenchley, Rachel, Spannagl, Manuel, Pfeifer, Matthias, Barker, Gary L.A., D’Amore, Rosalinda, Allen, Alexandra M., McKenzie, Neil, Kramer, Melissa, Kerhornou, Arnaud, Bolser, Dan, Kay, Suzanne, Waite, Darren, Trick, Martin, Bancroft, Ian, Gu, Yong, Huo, Naxin, Luo, Ming-Cheng, Sehgal, Sunish, Kianian, Sharyar, Gill, Bikram, Anderson, Olin, Kersey, Paul, Dvorak, Jan, McCombie, Richard, Hall, Anthony, Mayer, Klaus F.X., Edwards, Keith J., Bevan, Michael W., Hall, Neil
Publicado 2012

Gramene 2016: comparative plant genomics and pathway resources

por Tello-Ruiz, Marcela K., Stein, Joshua, Wei, Sharon, Preece, Justin, Olson, Andrew, Naithani, Sushma, Amarasinghe, Vindhya, Dharmawardhana, Palitha, Jiao, Yinping, Mulvaney, Joseph, Kumari, Sunita, Chougule, Kapeel, Elser, Justin, Wang, Bo, Thomason, James, Bolser, Daniel M., Kerhornou, Arnaud, Walts, Brandon, Fonseca, Nuno A., Huerta, Laura, Keays, Maria, Tang, Y. Amy, Parkinson, Helen, Fabregat, Antonio, McKay, Sheldon, Weiser, Joel, D'Eustachio, Peter, Stein, Lincoln, Petryszak, Robert, Kersey, Paul J., Jaiswal, Pankaj, Ware, Doreen
Publicado 2016

Ensembl Genomes 2013: scaling up access to genome-wide data

por Kersey, Paul Julian, Allen, James E., Christensen, Mikkel, Davis, Paul, Falin, Lee J., Grabmueller, Christoph, Hughes, Daniel Seth Toney, Humphrey, Jay, Kerhornou, Arnaud, Khobova, Julia, Langridge, Nicholas, McDowall, Mark D., Maheswari, Uma, Maslen, Gareth, Nuhn, Michael, Ong, Chuang Kee, Paulini, Michael, Pedro, Helder, Toneva, Iliana, Tuli, Mary Ann, Walts, Brandon, Williams, Gareth, Wilson, Derek, Youens-Clark, Ken, Monaco, Marcela K., Stein, Joshua, Wei, Xuehong, Ware, Doreen, Bolser, Daniel M., Howe, Kevin Lee, Kulesha, Eugene, Lawson, Daniel, Staines, Daniel Michael
Publicado 2014

Ensembl Genomes 2016: more genomes, more complexity

por Kersey, Paul Julian, Allen, James E., Armean, Irina, Boddu, Sanjay, Bolt, Bruce J., Carvalho-Silva, Denise, Christensen, Mikkel, Davis, Paul, Falin, Lee J., Grabmueller, Christoph, Humphrey, Jay, Kerhornou, Arnaud, Khobova, Julia, Aranganathan, Naveen K., Langridge, Nicholas, Lowy, Ernesto, McDowall, Mark D., Maheswari, Uma, Nuhn, Michael, Ong, Chuang Kee, Overduin, Bert, Paulini, Michael, Pedro, Helder, Perry, Emily, Spudich, Giulietta, Tapanari, Electra, Walts, Brandon, Williams, Gareth, Tello–Ruiz, Marcela, Stein, Joshua, Wei, Sharon, Ware, Doreen, Bolser, Daniel M., Howe, Kevin L., Kulesha, Eugene, Lawson, Daniel, Maslen, Gareth, Staines, Daniel M.
Publicado 2016

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

por Clavijo, Bernardo J., Venturini, Luca, Schudoma, Christian, Accinelli, Gonzalo Garcia, Kaithakottil, Gemy, Wright, Jonathan, Borrill, Philippa, Kettleborough, George, Heavens, Darren, Chapman, Helen, Lipscombe, James, Barker, Tom, Lu, Fu-Hao, McKenzie, Neil, Raats, Dina, Ramirez-Gonzalez, Ricardo H., Coince, Aurore, Peel, Ned, Percival-Alwyn, Lawrence, Duncan, Owen, Trösch, Josua, Yu, Guotai, Bolser, Dan M., Namaati, Guy, Kerhornou, Arnaud, Spannagl, Manuel, Gundlach, Heidrun, Haberer, Georg, Davey, Robert P., Fosker, Christine, Palma, Federica Di, Phillips, Andrew L., Millar, A. Harvey, Kersey, Paul J., Uauy, Cristobal, Krasileva, Ksenia V., Swarbreck, David, Bevan, Michael W., Clark, Matthew D.
Publicado 2017

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

por Katayama, Toshiaki, Arakawa, Kazuharu, Nakao, Mitsuteru, Ono, Keiichiro, Aoki-Kinoshita, Kiyoko F, Yamamoto, Yasunori, Yamaguchi, Atsuko, Kawashima, Shuichi, Chun, Hong-Woo, Aerts, Jan, Aranda, Bruno, Barboza, Lord Hendrix, Bonnal, Raoul JP, Bruskiewich, Richard, Bryne, Jan C, Fernández, José M, Funahashi, Akira, Gordon, Paul MK, Goto, Naohisa, Groscurth, Andreas, Gutteridge, Alex, Holland, Richard, Kano, Yoshinobu, Kawas, Edward A, Kerhornou, Arnaud, Kibukawa, Eri, Kinjo, Akira R, Kuhn, Michael, Lapp, Hilmar, Lehvaslaiho, Heikki, Nakamura, Hiroyuki, Nakamura, Yasukazu, Nishizawa, Tatsuya, Nobata, Chikashi, Noguchi, Tamotsu, Oinn, Thomas M, Okamoto, Shinobu, Owen, Stuart, Pafilis, Evangelos, Pocock, Matthew, Prins, Pjotr, Ranzinger, René, Reisinger, Florian, Salwinski, Lukasz, Schreiber, Mark, Senger, Martin, Shigemoto, Yasumasa, Standley, Daron M, Sugawara, Hideaki, Tashiro, Toshiyuki, Trelles, Oswaldo, Vos, Rutger A, Wilkinson, Mark D, York, William, Zmasek, Christian M, Asai, Kiyoshi, Takagi, Toshihisa
Publicado 2010

The BioMart community portal: an innovative alternative to large, centralized data repositories

por Smedley, Damian, Haider, Syed, Durinck, Steffen, Pandini, Luca, Provero, Paolo, Allen, James, Arnaiz, Olivier, Awedh, Mohammad Hamza, Baldock, Richard, Barbiera, Giulia, Bardou, Philippe, Beck, Tim, Blake, Andrew, Bonierbale, Merideth, Brookes, Anthony J., Bucci, Gabriele, Buetti, Iwan, Burge, Sarah, Cabau, Cédric, Carlson, Joseph W., Chelala, Claude, Chrysostomou, Charalambos, Cittaro, Davide, Collin, Olivier, Cordova, Raul, Cutts, Rosalind J., Dassi, Erik, Genova, Alex Di, Djari, Anis, Esposito, Anthony, Estrella, Heather, Eyras, Eduardo, Fernandez-Banet, Julio, Forbes, Simon, Free, Robert C., Fujisawa, Takatomo, Gadaleta, Emanuela, Garcia-Manteiga, Jose M., Goodstein, David, Gray, Kristian, Guerra-Assunção, José Afonso, Haggarty, Bernard, Han, Dong-Jin, Han, Byung Woo, Harris, Todd, Harshbarger, Jayson, Hastings, Robert K., Hayes, Richard D., Hoede, Claire, Hu, Shen, Hu, Zhi-Liang, Hutchins, Lucie, Kan, Zhengyan, Kawaji, Hideya, Keliet, Aminah, Kerhornou, Arnaud, Kim, Sunghoon, Kinsella, Rhoda, Klopp, Christophe, Kong, Lei, Lawson, Daniel, Lazarevic, Dejan, Lee, Ji-Hyun, Letellier, Thomas, Li, Chuan-Yun, Lio, Pietro, Liu, Chu-Jun, Luo, Jie, Maass, Alejandro, Mariette, Jerome, Maurel, Thomas, Merella, Stefania, Mohamed, Azza Mostafa, Moreews, Francois, Nabihoudine, Ibounyamine, Ndegwa, Nelson, Noirot, Céline, Perez-Llamas, Cristian, Primig, Michael, Quattrone, Alessandro, Quesneville, Hadi, Rambaldi, Davide, Reecy, James, Riba, Michela, Rosanoff, Steven, Saddiq, Amna Ali, Salas, Elisa, Sallou, Olivier, Shepherd, Rebecca, Simon, Reinhard, Sperling, Linda, Spooner, William, Staines, Daniel M., Steinbach, Delphine, Stone, Kevin, Stupka, Elia, Teague, Jon W., Dayem Ullah, Abu Z., Wang, Jun, Ware, Doreen, Wong-Erasmus, Marie, Youens-Clark, Ken, Zadissa, Amonida, Zhang, Shi-Jian, Kasprzyk, Arek
Publicado 2015