Comparative analysis of repeat content in plant genomes, large and small

por Argentin, Joris, Bolser, Dan, Kersey, Paul J., Flicek, Paul
Publicado 2023

Collaborative Annotation Redefines Gene Sets for Crucial Phytopathogens

por Pedro, Helder, Yates, Andrew D., Kersey, Paul J., De Silva, Nishadi H.
Publicado 2019

UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs

por Mignone, Flavio, Grillo, Giorgio, Licciulli, Flavio, Iacono, Michele, Liuni, Sabino, Kersey, Paul J., Duarte, Jorge, Saccone, Cecilia, Pesole, Graziano
Publicado 2005

Green plant genomes: What we know in an era of rapidly expanding opportunities

por Kress, W. John, Soltis, Douglas E., Kersey, Paul J., Wegrzyn, Jill L., Leebens-Mack, James H., Gostel, Morgan R., Liu, Xin, Soltis, Pamela S.
Publicado 2022

PomBase 2015: updates to the fission yeast database

por McDowall, Mark D., Harris, Midori A., Lock, Antonia, Rutherford, Kim, Staines, Daniel M., Bähler, Jürg, Kersey, Paul J., Oliver, Stephen G., Wood, Valerie
Publicado 2014

PomBase: a comprehensive online resource for fission yeast

por Wood, Valerie, Harris, Midori A., McDowall, Mark D., Rutherford, Kim, Vaughan, Brendan W., Staines, Daniel M., Aslett, Martin, Lock, Antonia, Bähler, Jürg, Kersey, Paul J., Oliver, Stephen G.
Publicado 2012

Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR

por Beier, Sebastian, Fiebig, Anne, Pommier, Cyril, Liyanage, Isuru, Lange, Matthias, Kersey, Paul J., Weise, Stephan, Finkers, Richard, Koylass, Baron, Cezard, Timothee, Courtot, Mélanie, Contreras-Moreira, Bruno, Naamati, Guy, Dyer, Sarah, Scholz, Uwe
Publicado 2022

Data management challenges for artificial intelligence in plant and agricultural research

por Williamson, Hugh F., Brettschneider, Julia, Caccamo, Mario, Davey, Robert P., Goble, Carole, Kersey, Paul J., May, Sean, Morris, Richard J., Ostler, Richard, Pridmore, Tony, Rawlings, Chris, Studholme, David, Tsaftaris, Sotirios A., Leonelli, Sabina
Publicado 2023

Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species

por Kersey, Paul J., Staines, Daniel M., Lawson, Daniel, Kulesha, Eugene, Derwent, Paul, Humphrey, Jay C., Hughes, Daniel S. T., Keenan, Stephan, Kerhornou, Arnaud, Koscielny, Gautier, Langridge, Nicholas, McDowall, Mark D., Megy, Karine, Maheswari, Uma, Nuhn, Michael, Paulini, Michael, Pedro, Helder, Toneva, Iliana, Wilson, Derek, Yates, Andrew, Birney, Ewan
Publicado 2012

Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms

por Brewer, Grace E., Clarkson, James J., Maurin, Olivier, Zuntini, Alexandre R., Barber, Vanessa, Bellot, Sidonie, Biggs, Nicola, Cowan, Robyn S., Davies, Nina M. J., Dodsworth, Steven, Edwards, Sara L., Eiserhardt, Wolf L., Epitawalage, Niroshini, Frisby, Sue, Grall, Aurélie, Kersey, Paul J., Pokorny, Lisa, Leitch, Ilia J., Forest, Félix, Baker, William J.
Publicado 2019

Advancing vector biology research: a community survey for future directions, research applications and infrastructure requirements

por Kohl, Alain, Pondeville, Emilie, Schnettler, Esther, Crisanti, Andrea, Supparo, Clelia, Christophides, George K., Kersey, Paul J., Maslen, Gareth L., Takken, Willem, Koenraadt, Constantianus J. M., Oliva, Clelia F., Busquets, Núria, Abad, F. Xavier, Failloux, Anna-Bella, Levashina, Elena A., Wilson, Anthony J., Veronesi, Eva, Pichard, Maëlle, Arnaud Marsh, Sarah, Simard, Frédéric, Vernick, Kenneth D.
Publicado 2016

Gramene 2013: comparative plant genomics resources

por Monaco, Marcela K., Stein, Joshua, Naithani, Sushma, Wei, Sharon, Dharmawardhana, Palitha, Kumari, Sunita, Amarasinghe, Vindhya, Youens-Clark, Ken, Thomason, James, Preece, Justin, Pasternak, Shiran, Olson, Andrew, Jiao, Yinping, Lu, Zhenyuan, Bolser, Dan, Kerhornou, Arnaud, Staines, Dan, Walts, Brandon, Wu, Guanming, D’Eustachio, Peter, Haw, Robin, Croft, David, Kersey, Paul J., Stein, Lincoln, Jaiswal, Pankaj, Ware, Doreen
Publicado 2014

A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life

por Baker, William J, Bailey, Paul, Barber, Vanessa, Barker, Abigail, Bellot, Sidonie, Bishop, David, Botigué, Laura R, Brewer, Grace, Carruthers, Tom, Clarkson, James J, Cook, Jeffrey, Cowan, Robyn S, Dodsworth, Steven, Epitawalage, Niroshini, Françoso, Elaine, Gallego, Berta, Johnson, Matthew G, Kim, Jan T, Leempoel, Kevin, Maurin, Olivier, Mcginnie, Catherine, Pokorny, Lisa, Roy, Shyamali, Stone, Malcolm, Toledo, Eduardo, Wickett, Norman J, Zuntini, Alexandre R, Eiserhardt, Wolf L, Kersey, Paul J, Leitch, Ilia J, Forest, Félix
Publicado 2021

Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors

por Campbell, Lahcen I., Nwezeobi, Joachim, van Brunschot, Sharon L., Kaweesi, Tadeo, Seal, Susan E., Swamy, Rekha A. R., Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M. N., Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus, Colvin, John
Publicado 2023

Gramene 2016: comparative plant genomics and pathway resources

por Tello-Ruiz, Marcela K., Stein, Joshua, Wei, Sharon, Preece, Justin, Olson, Andrew, Naithani, Sushma, Amarasinghe, Vindhya, Dharmawardhana, Palitha, Jiao, Yinping, Mulvaney, Joseph, Kumari, Sunita, Chougule, Kapeel, Elser, Justin, Wang, Bo, Thomason, James, Bolser, Daniel M., Kerhornou, Arnaud, Walts, Brandon, Fonseca, Nuno A., Huerta, Laura, Keays, Maria, Tang, Y. Amy, Parkinson, Helen, Fabregat, Antonio, McKay, Sheldon, Weiser, Joel, D'Eustachio, Peter, Stein, Lincoln, Petryszak, Robert, Kersey, Paul J., Jaiswal, Pankaj, Ware, Doreen
Publicado 2016

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

por Clavijo, Bernardo J., Venturini, Luca, Schudoma, Christian, Accinelli, Gonzalo Garcia, Kaithakottil, Gemy, Wright, Jonathan, Borrill, Philippa, Kettleborough, George, Heavens, Darren, Chapman, Helen, Lipscombe, James, Barker, Tom, Lu, Fu-Hao, McKenzie, Neil, Raats, Dina, Ramirez-Gonzalez, Ricardo H., Coince, Aurore, Peel, Ned, Percival-Alwyn, Lawrence, Duncan, Owen, Trösch, Josua, Yu, Guotai, Bolser, Dan M., Namaati, Guy, Kerhornou, Arnaud, Spannagl, Manuel, Gundlach, Heidrun, Haberer, Georg, Davey, Robert P., Fosker, Christine, Palma, Federica Di, Phillips, Andrew L., Millar, A. Harvey, Kersey, Paul J., Uauy, Cristobal, Krasileva, Ksenia V., Swarbreck, David, Bevan, Michael W., Clark, Matthew D.
Publicado 2017

Gramene 2018: unifying comparative genomics and pathway resources for plant research

por Tello-Ruiz, Marcela K, Naithani, Sushma, Stein, Joshua C, Gupta, Parul, Campbell, Michael, Olson, Andrew, Wei, Sharon, Preece, Justin, Geniza, Matthew J, Jiao, Yinping, Lee, Young Koung, Wang, Bo, Mulvaney, Joseph, Chougule, Kapeel, Elser, Justin, Al-Bader, Noor, Kumari, Sunita, Thomason, James, Kumar, Vivek, Bolser, Daniel M, Naamati, Guy, Tapanari, Electra, Fonseca, Nuno, Huerta, Laura, Iqbal, Haider, Keays, Maria, Munoz-Pomer Fuentes, Alfonso, Tang, Amy, Fabregat, Antonio, D’Eustachio, Peter, Weiser, Joel, Stein, Lincoln D, Petryszak, Robert, Papatheodorou, Irene, Kersey, Paul J, Lockhart, Patti, Taylor, Crispin, Jaiswal, Pankaj, Ware, Doreen
Publicado 2018

Enabling reusability of plant phenomic datasets with MIAPPE 1.1

por Papoutsoglou, Evangelia A., Faria, Daniel, Arend, Daniel, Arnaud, Elizabeth, Athanasiadis, Ioannis N., Chaves, Inês, Coppens, Frederik, Cornut, Guillaume, Costa, Bruno V., Ćwiek‐Kupczyńska, Hanna, Droesbeke, Bert, Finkers, Richard, Gruden, Kristina, Junker, Astrid, King, Graham J., Krajewski, Paweł, Lange, Matthias, Laporte, Marie‐Angélique, Michotey, Célia, Oppermann, Markus, Ostler, Richard, Poorter, Hendrik, Ramírez‐Gonzalez, Ricardo, Ramšak, Živa, Reif, Jochen C., Rocca‐Serra, Philippe, Sansone, Susanna‐Assunta, Scholz, Uwe, Tardieu, François, Uauy, Cristobal, Usadel, Björn, Visser, Richard G. F., Weise, Stephan, Kersey, Paul J., Miguel, Célia M., Adam‐Blondon, Anne‐Françoise, Pommier, Cyril
Publicado 2020

Ensembl Genomes 2020—enabling non-vertebrate genomic research

por Howe, Kevin L, Contreras-Moreira, Bruno, De Silva, Nishadi, Maslen, Gareth, Akanni, Wasiu, Allen, James, Alvarez-Jarreta, Jorge, Barba, Matthieu, Bolser, Dan M, Cambell, Lahcen, Carbajo, Manuel, Chakiachvili, Marc, Christensen, Mikkel, Cummins, Carla, Cuzick, Alayne, Davis, Paul, Fexova, Silvie, Gall, Astrid, George, Nancy, Gil, Laurent, Gupta, Parul, Hammond-Kosack, Kim E, Haskell, Erin, Hunt, Sarah E, Jaiswal, Pankaj, Janacek, Sophie H, Kersey, Paul J, Langridge, Nick, Maheswari, Uma, Maurel, Thomas, McDowall, Mark D, Moore, Ben, Muffato, Matthieu, Naamati, Guy, Naithani, Sushma, Olson, Andrew, Papatheodorou, Irene, Patricio, Mateus, Paulini, Michael, Pedro, Helder, Perry, Emily, Preece, Justin, Rosello, Marc, Russell, Matthew, Sitnik, Vasily, Staines, Daniel M, Stein, Joshua, Tello-Ruiz, Marcela K, Trevanion, Stephen J, Urban, Martin, Wei, Sharon, Ware, Doreen, Williams, Gary, Yates, Andrew D, Flicek, Paul
Publicado 2020

Standards recommendations for the Earth BioGenome Project

por Lawniczak, Mara K. N., Durbin, Richard, Flicek, Paul, Lindblad-Toh, Kerstin, Wei, Xiaofeng, Archibald, John M., Baker, William J., Belov, Katherine, Blaxter, Mark L., Marques Bonet, Tomas, Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Crawford, Andrew J., Davey, Robert P., Di Palma, Federica, Fang, Qi, Haerty, Wilfried, Hall, Neil, Hoff, Katharina J., Howe, Kerstin, Jarvis, Erich D., Johnson, Warren E., Johnson, Rebecca N., Kersey, Paul J., Liu, Xin, Lopez, Jose Victor, Myers, Eugene W., Pettersson, Olga Vinnere, Phillippy, Adam M., Poelchau, Monica F., Pruitt, Kim D., Rhie, Arang, Castilla-Rubio, Juan Carlos, Sahu, Sunil Kumar, Salmon, Nicholas A., Soltis, Pamela S., Swarbreck, David, Thibaud-Nissen, Françoise, Wang, Sibo, Wegrzyn, Jill L., Zhang, Guojie, Zhang, He, Lewin, Harris A., Richards, Stephen
Publicado 2022