Leveraging Curation Among Escherichia coli Pathway/Genome Databases Using Ortholog-Based Annotation Propagation

por Paley, Suzanne, Keseler, Ingrid M., Krummenacker, Markus, Karp, Peter D.
Publicado 2021

Dead End Metabolites - Defining the Known Unknowns of the E. coli Metabolic Network

por Mackie, Amanda, Keseler, Ingrid M., Nolan, Laura, Karp, Peter D., Paulsen, Ian T.
Publicado 2013

A genome-scale metabolic flux model of Escherichia coli K–12 derived from the EcoCyc database

por Weaver, Daniel S, Keseler, Ingrid M, Mackie, Amanda, Paulsen, Ian T, Karp, Peter D
Publicado 2014

Computing minimal nutrient sets from metabolic networks via linear constraint solving

por Eker, Steven, Krummenacker, Markus, Shearer, Alexander G, Tiwari, Ashish, Keseler, Ingrid M, Talcott, Carolyn, Karp, Peter D
Publicado 2013

EcoCyc: a comprehensive database resource for Escherichia coli

por Keseler, Ingrid M., Collado-Vides, Julio, Gama-Castro, Socorro, Ingraham, John, Paley, Suzanne, Paulsen, Ian T., Peralta-Gil, Martín, Karp, Peter D.
Publicado 2005

The MetaCyc database of metabolic pathways and enzymes - a 2019 update

por Caspi, Ron, Billington, Richard, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D
Publicado 2020

Curation accuracy of model organism databases

por Keseler, Ingrid M., Skrzypek, Marek, Weerasinghe, Deepika, Chen, Albert Y., Fulcher, Carol, Li, Gene-Wei, Lemmer, Kimberly C., Mladinich, Katherine M., Chow, Edmond D., Sherlock, Gavin, Karp, Peter D.
Publicado 2014

The MetaCyc database of metabolic pathways and enzymes

por Caspi, Ron, Billington, Richard, Fulcher, Carol A, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Midford, Peter E, Ong, Quang, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D
Publicado 2018

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

por Caspi, Ron, Billington, Richard, Ferrer, Luciana, Foerster, Hartmut, Fulcher, Carol A., Keseler, Ingrid M., Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A., Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S., Karp, Peter D.
Publicado 2016

Multidimensional annotation of the Escherichia coli K-12 genome

por Karp, Peter D., Keseler, Ingrid M., Shearer, Alexander, Latendresse, Mario, Krummenacker, Markus, Paley, Suzanne M., Paulsen, Ian, Collado-Vides, Julio, Gama-Castro, Socorro, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Peñaloza-Spínola, Mónica I., Bonavides-Martinez, César, Ingraham, John
Publicado 2007

EcoCyc: A comprehensive view of Escherichia coli biology

por Keseler, Ingrid M., Bonavides-Martínez, César, Collado-Vides, Julio, Gama-Castro, Socorro, Gunsalus, Robert P., Johnson, D. Aaron, Krummenacker, Markus, Nolan, Laura M., Paley, Suzanne, Paulsen, Ian T., Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Shearer, Alexander Glennon, Karp, Peter D.
Publicado 2009

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

por Caspi, Ron, Altman, Tomer, Dreher, Kate, Fulcher, Carol A., Subhraveti, Pallavi, Keseler, Ingrid M., Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A., Ong, Quang, Paley, Suzanne, Pujar, Anuradha, Shearer, Alexander G., Travers, Michael, Weerasinghe, Deepika, Zhang, Peifen, Karp, Peter D.
Publicado 2012

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

por Caspi, Ron, Altman, Tomer, Billington, Richard, Dreher, Kate, Foerster, Hartmut, Fulcher, Carol A., Holland, Timothy A., Keseler, Ingrid M., Kothari, Anamika, Kubo, Aya, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A., Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S., Weerasinghe, Deepika, Zhang, Peifen, Karp, Peter D.
Publicado 2014

The EcoCyc Database in 2021

por Keseler, Ingrid M., Gama-Castro, Socorro, Mackie, Amanda, Billington, Richard, Bonavides-Martínez, César, Caspi, Ron, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E., Muñiz-Rascado, Luis, Ong, Wai Kit, Paley, Suzanne, Santos-Zavaleta, Alberto, Subhraveti, Pallavi, Tierrafría, Víctor H., Wolfe, Alan J., Collado-Vides, Julio, Paulsen, Ian T., Karp, Peter D.
Publicado 2021

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

por Riley, Monica, Abe, Takashi, Arnaud, Martha B., Berlyn, Mary K.B., Blattner, Frederick R., Chaudhuri, Roy R., Glasner, Jeremy D., Horiuchi, Takashi, Keseler, Ingrid M., Kosuge, Takehide, Mori, Hirotada, Perna, Nicole T., Plunkett, Guy, Rudd, Kenneth E., Serres, Margrethe H., Thomas, Gavin H., Thomson, Nicholas R., Wishart, David, Wanner, Barry L.
Publicado 2006

EcoCyc: a comprehensive database of Escherichia coli biology

por Keseler, Ingrid M., Collado-Vides, Julio, Santos-Zavaleta, Alberto, Peralta-Gil, Martin, Gama-Castro, Socorro, Muñiz-Rascado, Luis, Bonavides-Martinez, César, Paley, Suzanne, Krummenacker, Markus, Altman, Tomer, Kaipa, Pallavi, Spaulding, Aaron, Pacheco, John, Latendresse, Mario, Fulcher, Carol, Sarker, Malabika, Shearer, Alexander G., Mackie, Amanda, Paulsen, Ian, Gunsalus, Robert P., Karp, Peter D.
Publicado 2011

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12

por Keseler, Ingrid M., Mackie, Amanda, Santos-Zavaleta, Alberto, Billington, Richard, Bonavides-Martínez, César, Caspi, Ron, Fulcher, Carol, Gama-Castro, Socorro, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Muñiz-Rascado, Luis, Ong, Quang, Paley, Suzanne, Peralta-Gil, Martin, Subhraveti, Pallavi, Velázquez-Ramírez, David A., Weaver, Daniel, Collado-Vides, Julio, Paulsen, Ian, Karp, Peter D.
Publicado 2017

EcoCyc: fusing model organism databases with systems biology

por Keseler, Ingrid M., Mackie, Amanda, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Bonavides-Martínez, César, Fulcher, Carol, Huerta, Araceli M., Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Muñiz-Rascado, Luis, Ong, Quang, Paley, Suzanne, Schröder, Imke, Shearer, Alexander G., Subhraveti, Pallavi, Travers, Mike, Weerasinghe, Deepika, Weiss, Verena, Collado-Vides, Julio, Gunsalus, Robert P., Paulsen, Ian, Karp, Peter D.
Publicado 2013

Overview of the interactive task in BioCreative V

por Wang, Qinghua, S. Abdul, Shabbir, Almeida, Lara, Ananiadou, Sophia, Balderas-Martínez, Yalbi I., Batista-Navarro, Riza, Campos, David, Chilton, Lucy, Chou, Hui-Jou, Contreras, Gabriela, Cooper, Laurel, Dai, Hong-Jie, Ferrell, Barbra, Fluck, Juliane, Gama-Castro, Socorro, George, Nancy, Gkoutos, Georgios, Irin, Afroza K., Jensen, Lars J., Jimenez, Silvia, Jue, Toni R., Keseler, Ingrid, Madan, Sumit, Matos, Sérgio, McQuilton, Peter, Milacic, Marija, Mort, Matthew, Natarajan, Jeyakumar, Pafilis, Evangelos, Pereira, Emiliano, Rao, Shruti, Rinaldi, Fabio, Rothfels, Karen, Salgado, David, Silva, Raquel M., Singh, Onkar, Stefancsik, Raymund, Su, Chu-Hsien, Subramani, Suresh, Tadepally, Hamsa D., Tsaprouni, Loukia, Vasilevsky, Nicole, Wang, Xiaodong, Chatr-Aryamontri, Andrew, Laulederkind, Stanley J. F., Matis-Mitchell, Sherri, McEntyre, Johanna, Orchard, Sandra, Pundir, Sangya, Rodriguez-Esteban, Raul, Van Auken, Kimberly, Lu, Zhiyong, Schaeffer, Mary, Wu, Cathy H., Hirschman, Lynette, Arighi, Cecilia N.
Publicado 2016