Influence of metabolic network structure and function on enzyme evolution

por Vitkup, Dennis, Kharchenko, Peter, Wagner, Andreas
Publicado 2006

Expression dynamics of a cellular metabolic network

por Kharchenko, Peter, Church, George M, Vitkup, Dennis
Publicado 2005

Bayesian approach to single-cell differential expression analysis

por Kharchenko, Peter V., Silberstein, Lev, Scadden, David T.
Publicado 2014

Design and analysis of ChIP-seq experiments for DNA-binding proteins

por Kharchenko, Peter V., Tolstorukov, Michael Y., Park, Peter J.
Publicado 2008

scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data

por Faure, Louis, Soldatov, Ruslan, Kharchenko, Peter V, Adameyko, Igor
Publicado 2022

Identifying metabolic enzymes with multiple types of association evidence

por Kharchenko, Peter, Chen, Lifeng, Freund, Yoav, Vitkup, Dennis, Church, George M
Publicado 2006

Estimating enrichment of repetitive elements from high-throughput sequence data

por Day, Daniel S, Luquette, Lovelace J, Park, Peter J, Kharchenko, Peter V
Publicado 2010

RNA velocity—current challenges and future perspectives

por Bergen, Volker, Soldatov, Ruslan A, Kharchenko, Peter V, Theis, Fabian J
Publicado 2021

Gene panel selection for targeted spatial transcriptomics

por Zhang, Yida, Petukhov, Viktor, Biederstedt, Evan, Que, Richard, Zhang, Kun, Kharchenko, Peter V.
Publicado 2023

Identification of regions in the HOX cluster that can confer repression in a Polycomb-dependent manner

por Woo, Caroline J, Kharchenko, Peter V, Daheron, Laurence, Park, Peter J, Kingston, Robert E
Publicado 2013

Circadian Kinetics of Cell Cycle Progression in Adult Neurogenic Niches of a Diurnal Vertebrate

por Akle, Veronica, Stankiewicz, Alexander J., Kharchenko, Vasili, Yu, Lili, Kharchenko, Peter V., Zhdanova, Irina V.
Publicado 2017

Joint analysis of heterogeneous single-cell RNA-seq dataset collections

por Barkas, Nikolas, Petukhov, Viktor, Nikolaeva, Daria, Lozinsky, Yaroslav, Demharter, Samuel, Khodosevich, Konstantin, Kharchenko, Peter V.
Publicado 2019

dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments

por Petukhov, Viktor, Guo, Jimin, Baryawno, Ninib, Severe, Nicolas, Scadden, David T., Samsonova, Maria G., Kharchenko, Peter V.
Publicado 2018

Cell Kinetics in the Adult Neurogenic Niche and Impact of Diet-Induced Accelerated Aging

por Stankiewicz, Alexander J., Mortazavi, Farzad, Kharchenko, Peter V., McGowan, Erin M., Kharchenko, Vasili, Zhdanova, Irina V.
Publicado 2019

X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila

por Larschan, Erica, Bishop, Eric P., Kharchenko, Peter V., Core, Leighton, Lis, John T., Park, Peter J., Kuroda, Mitzi I.
Publicado 2011

Heterochromatin-associated interactions of Drosophila HP1a with dADD1, HIPP1, and repetitive RNAs

por Alekseyenko, Artyom A., Gorchakov, Andrey A., Zee, Barry M., Fuchs, Stephen M., Kharchenko, Peter V., Kuroda, Mitzi I.
Publicado 2014

A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA

por Lake, Blue B., Codeluppi, Simone, Yung, Yun C., Gao, Derek, Chun, Jerold, Kharchenko, Peter V., Linnarsson, Sten, Zhang, Kun
Publicado 2017

Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2

por Specht, Harrison, Emmott, Edward, Petelski, Aleksandra A., Huffman, R. Gray, Perlman, David H., Serra, Marco, Kharchenko, Peter, Koller, Antonius, Slavov, Nikolai
Publicado 2021

The oncogenic BRD4-NUT chromatin regulator drives aberrant transcription within large topological domains

por Alekseyenko, Artyom A., Walsh, Erica M., Wang, Xin, Grayson, Adlai R., Hsi, Peter T., Kharchenko, Peter V., Kuroda, Mitzi I., French, Christopher A.
Publicado 2015

Image-seq: spatially resolved single-cell sequencing guided by in situ and in vivo imaging

por Haase, Christa, Gustafsson, Karin, Mei, Shenglin, Yeh, Shu-Chi, Richter, Dmitry, Milosevic, Jelena, Turcotte, Raphaël, Kharchenko, Peter V., Sykes, David B., Scadden, David T., Lin, Charles P.
Publicado 2022