Energy Landscape of All-Atom Protein-Protein Interactions Revealed by Multiscale Enhanced Sampling

por Moritsugu, Kei, Terada, Tohru, Kidera, Akinori
Publicado 2014

Itinerary profiling to analyze a large number of protein-folding trajectories

por Ota, Motonori, Ikeguchi, Mitsunori, Kidera, Akinori
Publicado 2016

Allosteric response to ligand binding: Molecular dynamics study of the N-terminal domains in IP(3) receptor

por Moritsugu, Kei, Ito, Tsubasa, Kidera, Akinori
Publicado 2019

PSCDB: a database for protein structural change upon ligand binding

por Amemiya, Takayuki, Koike, Ryotaro, Kidera, Akinori, Ota, Motonori
Publicado 2012

Molecular modeling of the HAMP domain of sensory rhodopsin II transducer from Natronomonas pharaonis

por Nishikata, Koro, Fuchigami, Sotaro, Ikeguchi, Mitsunori, Kidera, Akinori
Publicado 2010

Allosteric Regulation of 3CL Protease of SARS-CoV-2 and SARS-CoV Observed in the Crystal Structure Ensemble

por Kidera, Akinori, Moritsugu, Kei, Ekimoto, Toru, Ikeguchi, Mitsunori
Publicado 2021

Functional dynamics of SARS-CoV-2 3C-like protease as a member of clan PA

por Kidera, Akinori, Moritsugu, Kei, Ekimoto, Toru, Ikeguchi, Mitsunori
Publicado 2022

Motion Tree Delineates Hierarchical Structure of Protein Dynamics Observed in Molecular Dynamics Simulation

por Moritsugu, Kei, Koike, Ryotaro, Yamada, Kouki, Kato, Hiroaki, Kidera, Akinori
Publicado 2015

Dynamic recognition and linkage specificity in K63 di-ubiquitin and TAB2 NZF domain complex

por Moritsugu, Kei, Nishi, Hafumi, Inariyama, Keiichi, Kobayashi, Masanori, Kidera, Akinori
Publicado 2018

Minimum Free Energy Path of Ligand-Induced Transition in Adenylate Kinase

por Matsunaga, Yasuhiro, Fujisaki, Hiroshi, Terada, Tohru, Furuta, Tadaomi, Moritsugu, Kei, Kidera, Akinori
Publicado 2012

Influence of Structural Symmetry on Protein Dynamics

por Matsunaga, Yasuhiro, Koike, Ryotaro, Ota, Motonori, Tame, Jeremy R. H., Kidera, Akinori
Publicado 2012

Ionic scattering factors of atoms that compose biological molecules

por Yonekura, Koji, Matsuoka, Rei, Yamashita, Yoshiki, Yamane, Tsutomu, Ikeguchi, Mitsunori, Kidera, Akinori, Maki-Yonekura, Saori
Publicado 2018

Energetics and conformational pathways of functional rotation in the multidrug transporter AcrB

por Matsunaga, Yasuhiro, Yamane, Tsutomu, Terada, Tohru, Moritsugu, Kei, Fujisaki, Hiroshi, Murakami, Satoshi, Ikeguchi, Mitsunori, Kidera, Akinori
Publicado 2018

Molecular basis of ubiquitin-specific protease 8 autoinhibition by the WW-like domain

por Kakihara, Keijun, Asamizu, Kengo, Moritsugu, Kei, Kubo, Masahide, Kitaguchi, Tetsuya, Endo, Akinori, Kidera, Akinori, Ikeguchi, Mitsunori, Kato, Akira, Komada, Masayuki, Fukushima, Toshiaki
Publicado 2021

Extended string-like binding of the phosphorylated HP1α N-terminal tail to the lysine 9-methylated histone H3 tail

por Shimojo, Hideaki, Kawaguchi, Ayumi, Oda, Takashi, Hashiguchi, Nobuto, Omori, Satoshi, Moritsugu, Kei, Kidera, Akinori, Hiragami-Hamada, Kyoko, Nakayama, Jun-ichi, Sato, Mamoru, Nishimura, Yoshifumi
Publicado 2016

SAHG, a comprehensive database of predicted structures of all human proteins

por Motono, Chie, Nakata, Junichi, Koike, Ryotaro, Shimizu, Kana, Shirota, Matsuyuki, Amemiya, Takayuki, Tomii, Kentaro, Nagano, Nozomi, Sakaya, Naofumi, Misoo, Kiyotaka, Sato, Miwa, Kidera, Akinori, Hiroaki, Hidekazu, Shirai, Tsuyoshi, Kinoshita, Kengo, Noguchi, Tamotsu, Ota, Motonori
Publicado 2011