KISSPLICE: de-novo calling alternative splicing events from RNA-seq data

por Sacomoto, Gustavo AT, Kielbassa, Janice, Chikhi, Rayan, Uricaru, Raluca, Antoniou, Pavlos, Sagot, Marie-France, Peterlongo, Pierre, Lacroix, Vincent
Publicado 2012

Exploration of the core metabolism of symbiotic bacteria

por Klein, Cecilia Coimbra, Cottret, Ludovic, Kielbassa, Janice, Charles, Hubert, Gautier, Christian, Ribeiro de Vasconcelos, Ana Tereza, Lacroix, Vincent, Sagot, Marie-France
Publicado 2012

Comprehensive characterization of claudin-low breast tumors reflects the impact of the cell-of-origin on cancer evolution

por Pommier, Roxane M., Sanlaville, Amélien, Tonon, Laurie, Kielbassa, Janice, Thomas, Emilie, Ferrari, Anthony, Sertier, Anne-Sophie, Hollande, Frédéric, Martinez, Pierre, Tissier, Agnès, Morel, Anne-Pierre, Ouzounova, Maria, Puisieux, Alain
Publicado 2020

A 13-gene expression-based radioresistance score highlights the heterogeneity in the response to radiation therapy across HPV-negative HNSCC molecular subtypes

por Foy, Jean-Philippe, Bazire, Louis, Ortiz-Cuaran, Sandra, Deneuve, Sophie, Kielbassa, Janice, Thomas, Emilie, Viari, Alain, Puisieux, Alain, Goudot, Patrick, Bertolus, Chloé, Foray, Nicolas, Kirova, Youlia, Verrelle, Pierre, Saintigny, Pierre
Publicado 2017

SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

por Lopez-Maestre, Hélène, Brinza, Lilia, Marchet, Camille, Kielbassa, Janice, Bastien, Sylvère, Boutigny, Mathilde, Monnin, David, Filali, Adil El, Carareto, Claudia Marcia, Vieira, Cristina, Picard, Franck, Kremer, Natacha, Vavre, Fabrice, Sagot, Marie-France, Lacroix, Vincent
Publicado 2016

Immunological and classical subtypes of oral premalignant lesions

por Foy, Jean-Philippe, Bertolus, Chloé, Ortiz-Cuaran, Sandra, Albaret, Marie-Alexandra, Williams, William N, Lang, Wenhua, Destandau, Solène, Souza, Geneviève De, Sohier, Emilie, Kielbassa, Janice, Thomas, Emilie, Deneuve, Sophie, Goudot, Patrick, Puisieux, Alain, Viari, Alain, Mao, Li, Caux, Christophe, Lippman, SM, Saintigny, P
Publicado 2018

An Early Neoplasia Index (ENI10), Based on Molecular Identity of CD10 Cells and Associated Stemness Biomarkers, is a Predictor of Patient Outcome in Many Cancers

por Guyot, Boris, Clément, Flora, Drouet, Youenn, Schmidt, Xenia, Lefort, Sylvain, Delay, Emmanuel, Treilleux, Isabelle, Foy, Jean-Philippe, Jeanpierre, Sandrine, Thomas, Emilie, Kielbassa, Janice, Tonon, Laurie, Zhu, Helen He, Saintigny, Pierre, Gao, Wei-Qiang, de la Fouchardiere, Arnaud, Tirode, Franck, Viari, Alain, Blay, Jean-Yves, Maguer-Satta, Véronique
Publicado 2023

Ribosomal RNA 2′ O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer

por Marcel, Virginie, Kielbassa, Janice, Marchand, Virginie, Natchiar, Kundhavai S, Paraqindes, Hermes, Van Long, Flora Nguyen, Ayadi, Lilia, Bourguignon-Igel, Valérie, Monaco, Piero Lo, Monchiet, Déborah, Scott, Véronique, Tonon, Laurie, Bray, Susan E, Diot, Alexandra, Jordan, Lee B, Thompson, Alastair M, Bourdon, Jean-Christophe, Dubois, Thierry, André, Fabrice, Catez, Frédéric, Puisieux, Alain, Motorin, Yuri, Klaholz, Bruno P, Viari, Alain, Diaz, Jean-Jacques
Publicado 2021

Ribosomal RNA 2′O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer

por Marcel, Virginie, Kielbassa, Janice, Marchand, Virginie, Natchiar, Kundhavai S, Paraqindes, Hermes, Nguyen Van Long, Flora, Ayadi, Lilia, Bourguignon-Igel, Valérie, Lo Monaco, Piero, Monchiet, Déborah, Scott, Véronique, Tonon, Laurie, Bray, Susan E, Diot, Alexandra, Jordan, Lee B, Thompson, Alastair M, Bourdon, Jean-Christophe, Dubois, Thierry, André, Fabrice, Catez, Frédéric, Puisieux, Alain, Motorin, Yuri, Klaholz, Bruno P, Viari, Alain, Diaz, Jean-Jacques
Publicado 2020

Dissecting the Origin of Heterogeneity in Uterine and Ovarian Carcinosarcomas

por Sertier, Anne-Sophie, Ferrari, Anthony, Pommier, Roxane M., Treilleux, Isabelle, Boyault, Sandrine, Devouassoux-Shisheboran, Mojgan, Kielbassa, Janice, Thomas, Emilie, Tonon, Laurie, Le Texier, Vincent, Charreton, Amandine, Morel, Anne-Pierre, Floquet, Anne, Joly, Florence, Berton-Rigaud, Dominique, Ferron, Gwenaël, Arnould, Laurent, Croce, Sabrina, Bataillon, Guillaume, Saintigny, Pierre, Mery-Lamarche, Eliane, Sagan, Christine, Senaratne, Aruni P., Gut, Ivo G., Calvo, Fabien, Viari, Alain, Ouzounova, Maria, Ray-Coquard, Isabelle, Puisieux, Alain
Publicado 2023

A whole-genome sequence and transcriptome perspective on HER2-positive breast cancers

por Ferrari, Anthony, Vincent-Salomon, Anne, Pivot, Xavier, Sertier, Anne-Sophie, Thomas, Emilie, Tonon, Laurie, Boyault, Sandrine, Mulugeta, Eskeatnaf, Treilleux, Isabelle, MacGrogan, Gaëtan, Arnould, Laurent, Kielbassa, Janice, Le Texier, Vincent, Blanché, Hélène, Deleuze, Jean-François, Jacquemier, Jocelyne, Mathieu, Marie-Christine, Penault-Llorca, Frédérique, Bibeau, Frédéric, Mariani, Odette, Mannina, Cécile, Pierga, Jean-Yves, Trédan, Olivier, Bachelot, Thomas, Bonnefoi, Hervé, Romieu, Gilles, Fumoleau, Pierre, Delaloge, Suzette, Rios, Maria, Ferrero, Jean-Marc, Tarpin, Carole, Bouteille, Catherine, Calvo, Fabien, Gut, Ivo Glynne, Gut, Marta, Martin, Sancha, Nik-Zainal, Serena, Stratton, Michael R., Pauporté, Iris, Saintigny, Pierre, Birnbaum, Daniel, Viari, Alain, Thomas, Gilles
Publicado 2016