FIGG: Simulating populations of whole genome sequences for heterogeneous data analyses

por Killcoyne, Sarah, del Sol, Antonio
Publicado 2014

Identification of large-scale genomic variation in cancer genomes using in silico reference models

por Killcoyne, Sarah, del Sol, Antonio
Publicado 2016

Practical early cancer detection: distinguishing stable from unstable genomes in pre-cancerous tissues

por Killcoyne, Sarah, Fitzgerald, Rebecca C.
Publicado 2020

Systems biology driven software design for the research enterprise

por Boyle, John, Cavnor, Christopher, Killcoyne, Sarah, Shmulevich, Ilya
Publicado 2008

SAMQA: error classification and validation of high-throughput sequenced read data

por Robinson, Thomas, Killcoyne, Sarah, Bressler, Ryan, Boyle, John
Publicado 2011

Methods for visual mining of genomic and proteomic data atlases

por Boyle, John, Kreisberg, Richard, Bressler, Ryan, Killcoyne, Sarah
Publicado 2012

Adaptable data management for systems biology investigations

por Boyle, John, Rovira, Hector, Cavnor, Chris, Burdick, David, Killcoyne, Sarah, Shmulevich, Ilya
Publicado 2009

Real-world implementation of non-endoscopic triage testing for Barrett’s oesophagus during COVID-19

por Landy, R, Killcoyne, S, Tang, C, Juniat, S, O’Donovan, M, Goel, N, Gehrung, M, Fitzgerald, R C
Publicado 2023

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework

por Lewis, Steven, Csordas, Attila, Killcoyne, Sarah, Hermjakob, Henning, Hoopmann, Michael R, Moritz, Robert L, Deutsch, Eric W, Boyle, John
Publicado 2012

SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments

por Burdick, David B, Cavnor, Chris C, Handcock, Jeremy, Killcoyne, Sarah, Lin, Jake, Marzolf, Bruz, Ramsey, Stephen A, Rovira, Hector, Bressler, Ryan, Shmulevich, Ilya, Boyle, John
Publicado 2010

Mutational signature dynamics shaping the evolution of oesophageal adenocarcinoma

por Abbas, Sujath, Pich, Oriol, Devonshire, Ginny, Zamani, Shahriar A., Katz-Summercorn, Annalise, Killcoyne, Sarah, Cheah, Calvin, Nutzinger, Barbara, Grehan, Nicola, Lopez-Bigas, Nuria, Fitzgerald, Rebecca C., Secrier, Maria
Publicado 2023

Aneuploidy in targeted endoscopic biopsies outperforms other tissue biomarkers in the prediction of histologic progression of Barrett's oesophagus: A multi-centre prospective cohor...

por Hadjinicolaou, Andreas V., van Munster, Sanne N., Achilleos, Achilleas, Santiago Garcia, Jose, Killcoyne, Sarah, Ragunath, Krish, Bergman, Jacques J.G.H.M., Fitzgerald, Rebecca C., di Pietro, Massimiliano
Publicado 2020

Rearrangement processes and structural variations show evidence of selection in oesophageal adenocarcinomas

por Ng, Alvin Wei Tian, Contino, Gianmarco, Killcoyne, Sarah, Devonshire, Ginny, Hsu, Ray, Abbas, Sujath, Su, Jing, Redmond, Aisling M., Weaver, Jamie M. J., Eldridge, Matthew D., Tavaré, Simon, Edwards, Paul A. W., Fitzgerald, Rebecca C.
Publicado 2022

The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic

por Frankell, Alexander M, Jammula, SriGanesh, Li, Xiaodun, Contino, Gianmarco, Killcoyne, Sarah, Abbas, Sujath, Perner, Juliane, Bower, Lawrence, Devonshire, Ginny, Ococks, Emma, Grehan, Nicola, Mok, James, O’Donovan, Maria, MacRae, Shona, Eldridge, Matthew D., Tavaré, Simon, Fitzgerald, Rebecca C.
Publicado 2019

Use of a Cytosponge biomarker panel to prioritise endoscopic Barrett's oesophagus surveillance: a cross-sectional study followed by a real-world prospective pilot

por Pilonis, Nastazja Dagny, Killcoyne, Sarah, Tan, W Keith, O'Donovan, Maria, Malhotra, Shalini, Tripathi, Monika, Miremadi, Ahmad, Debiram-Beecham, Irene, Evans, Tara, Phillips, Rosemary, Morris, Danielle L, Vickery, Craig, Harrison, Jon, di Pietro, Massimiliano, Ortiz-Fernandez-Sordo, Jacobo, Haidry, Rehan, Kerridge, Abigail, Sasieni, Peter D, Fitzgerald, Rebecca C
Publicado 2022

T1DBase: integration and presentation of complex data for type 1 diabetes research

por Hulbert, Erin M., Smink, Luc J., Adlem, Ellen C., Allen, James E., Burdick, David B., Burren, Oliver S., Cavnor, Christopher C., Dolman, Geoffrey E., Flamez, Daisy, Friery, Karen F., Healy, Barry C., Killcoyne, Sarah A., Kutlu, Burak, Schuilenburg, Helen, Walker, Neil M., Mychaleckyj, Josyf, Eizirik, Decio L., Wicker, Linda S., Todd, John A., Goodman, Nathan
Publicado 2007