Logomaker: beautiful sequence logos in Python

por Tareen, Ammar, Kinney, Justin B
Publicado 2020

Concerted activities of Mcm4, Sld3, and Dbf4 in control of origin activation and DNA replication fork progression

por Sheu, Yi-Jun, Kinney, Justin B., Stillman, Bruce
Publicado 2016

Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves

por Adams, Rhys M, Mora, Thierry, Walczak, Aleksandra M, Kinney, Justin B
Publicado 2016

Mapping DNA sequence to transcription factor binding energy in vivo

por Barnes, Stephanie L., Belliveau, Nathan M., Ireland, William T., Kinney, Justin B., Phillips, Rob
Publicado 2019

Selection for Protein Stability Enriches for Epistatic Interactions

por Posfai, Anna, Zhou, Juannan, Plotkin, Joshua B., Kinney, Justin B., McCandlish, David M.
Publicado 2018

Measuring cis-regulatory energetics in living cells using allelic manifolds

por Forcier, Talitha L, Ayaz, Andalus, Gill, Manraj S, Jones, Daniel, Phillips, Rob, Kinney, Justin B
Publicado 2018

Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains

por Shi, Junwei, Wang, Eric, Milazzo, Joseph P., Wang, Zhihua, Kinney, Justin B., Vakoc, Christopher R.
Publicado 2015

MAVE-NN: learning genotype-phenotype maps from multiplex assays of variant effect

por Tareen, Ammar, Kooshkbaghi, Mahdi, Posfai, Anna, Ireland, William T., McCandlish, David M., Kinney, Justin B.
Publicado 2022

Higher-order epistasis and phenotypic prediction

por Zhou, Juannan, Wong, Mandy S., Chen, Wei-Chia, Krainer, Adrian R., Kinney, Justin B., McCandlish, David M.
Publicado 2022

Rapid generation of drug-resistance alleles at endogenous loci using CRISPR-Cas9 indel mutagenesis

por Ipsaro, Jonathan J., Shen, Chen, Arai, Eri, Xu, Yali, Kinney, Justin B., Joshua-Tor, Leemor, Vakoc, Christopher R., Shi, Junwei
Publicado 2017

Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria

por Belliveau, Nathan M., Barnes, Stephanie L., Ireland, William T., Jones, Daniel L., Sweredoski, Michael J., Moradian, Annie, Hess, Sonja, Kinney, Justin B., Phillips, Rob
Publicado 2018

The transcriptional cofactor TRIM33 prevents apoptosis in B lymphoblastic leukemia by deactivating a single enhancer

por Wang, Eric, Kawaoka, Shinpei, Roe, Jae-Seok, Shi, Junwei, Hohmann, Anja F, Xu, Yali, Bhagwat, Anand S, Suzuki, Yutaka, Kinney, Justin B, Vakoc, Christopher R
Publicado 2015

Rapid and tunable method to temporally control gene editing based on conditional Cas9 stabilization

por Senturk, Serif, Shirole, Nitin H., Nowak, Dawid G., Corbo, Vincenzo, Pal, Debjani, Vaughan, Alexander, Tuveson, David A., Trotman, Lloyd C., Kinney, Justin B., Sordella, Raffaella
Publicado 2017

Deciphering the regulatory genome of Escherichia coli, one hundred promoters at a time

por Ireland, William T, Beeler, Suzannah M, Flores-Bautista, Emanuel, McCarty, Nicholas S, Röschinger, Tom, Belliveau, Nathan M, Sweredoski, Michael J, Moradian, Annie, Kinney, Justin B, Phillips, Rob
Publicado 2020

Structural and mechanistic basis of σ-dependent transcriptional pausing

por Pukhrambam, Chirangini, Molodtsov, Vadim, Kooshkbaghi, Mahdi, Tareen, Ammar, Vu, Hoa, Skalenko, Kyle S., Su, Min, Yin, Zhou, Winkelman, Jared T., Kinney, Justin B., Ebright, Richard H., Nickels, Bryce E.
Publicado 2022

Rapid dissection and model-based optimization of inducible enhancers in human cells using a massively parallel reporter assay

por Melnikov, Alexandre, Murugan, Anand, Zhang, Xiaolan, Tesileanu, Tiberiu, Wang, Li, Rogov, Peter, Feizi, Soheil, Gnirke, Andreas, Callan, Curtis G., Kinney, Justin B., Kellis, Manolis, Lander, Eric S., Mikkelsen, Tarjei S.
Publicado 2012