Sequence-Dependent Orientational Coupling and Electrostatic Attraction in Cation-Mediated DNA–DNA Interactions

por He, Weiwei, Qiu, Xiangyun, Kirmizialtin, Serdal
Publicado 2023

Dynamic void distribution in myoglobin and five mutants

por Jiang, Yingying, Kirmizialtin, Serdal, Sanchez, Isaac C.
Publicado 2014

Comparative Computational Approach To Study Enzyme Reactions Using QM and QM-MM Methods

por Yildiz, Ibrahim, Yildiz, Banu Sizirici, Kirmizialtin, Serdal
Publicado 2018

Differences in ion-RNA binding modes due to charge density variations explain the stability of RNA in monovalent salts

por Henning-Knechtel, Anja, Thirumalai, D., Kirmizialtin, Serdal
Publicado 2022

Visualizing RNA Structures by SAXS-Driven MD Simulations

por He, Weiwei, Henning-Knechtel, Anja, Kirmizialtin, Serdal
Publicado 2022

Conformational dynamics during misincorporation and mismatch extension defined using a DNA polymerase with a fluorescent artificial amino acid

por Dangerfield, Tyler L., Kirmizialtin, Serdal, Johnson, Kenneth A.
Publicado 2021

Substrate specificity and proposed structure of the proofreading complex of T7 DNA polymerase

por Dangerfield, Tyler L., Kirmizialtin, Serdal, Johnson, Kenneth A.
Publicado 2022

Refining the RNA Force Field with Small-Angle X-ray Scattering of Helix–Junction–Helix RNA

por He, Weiwei, Naleem, Nawavi, Kleiman, Diego, Kirmizialtin, Serdal
Publicado 2022

The structural plasticity of nucleic acid duplexes revealed by WAXS and MD

por He, Weiwei, Chen, Yen-Lin, Pollack, Lois, Kirmizialtin, Serdal
Publicado 2021

Atomistic structure of the SARS-CoV-2 pseudoknot in solution from SAXS-driven molecular dynamics

por He, Weiwei, San Emeterio, Josue, Woodside, Michael T, Kirmizialtin, Serdal, Pollack, Lois
Publicado 2023

A Chemical Template for Synthesis of Molecular Sheets of Calcium Carbonate

por Rianasari, Ina, Benyettou, Farah, Sharma, Sudhir Kumar, Blanton, Thomas, Kirmizialtin, Serdal, Jagannathan, Ramesh
Publicado 2016

Structure-guided DNA–DNA attraction mediated by divalent cations

por Srivastava, Amit, Timsina, Raju, Heo, Seung, Dewage, Sajeewa W, Kirmizialtin, Serdal, Qiu, Xiangyun
Publicado 2020

Revealing the distinct folding phases of an RNA three-helix junction

por Plumridge, Alex, Katz, Andrea M, Calvey, George D, Elber, Ron, Kirmizialtin, Serdal, Pollack, Lois
Publicado 2018

Tracking fluctuation hotspots on the yeast ribosome through the elongation cycle

por Gulay, Suna P., Bista, Sujal, Varshney, Amitabh, Kirmizialtin, Serdal, Sanbonmatsu, Karissa Y., Dinman, Jonathan D.
Publicado 2017

Kinetic and thermodynamic analysis defines roles for two metal ions in DNA polymerase specificity and catalysis

por Gong, Shanzhong, Kirmizialtin, Serdal, Chang, Adrienne, Mayfield, Joshua E., Zhang, Yan Jessie, Johnson, Kenneth A.
Publicado 2020

The catalytic inactivation of the N-half of human hexokinase 2 and structural and biochemical characterization of its mitochondrial conformation

por Nawaz, Mir Hussain, Ferreira, Juliana C., Nedyalkova, Lyudmila, Zhu, Haizhong, Carrasco-López, César, Kirmizialtin, Serdal, Rabeh, Wael M.
Publicado 2018

Covalent Organic Framework Based on Azacalix[4]arene for the Efficient Capture of Dialysis Waste Products

por Skorjanc, Tina, Shetty, Dinesh, Gándara, Felipe, Pascal, Simon, Naleem, Nawavi, Abubakar, Salma, Ali, Liaqat, Mohammed, Abdul Khayum, Raya, Jesus, Kirmizialtin, Serdal, Siri, Olivier, Trabolsi, Ali
Publicado 2022

Light-driven self-assembly of spiropyran-functionalized covalent organic framework

por Das, Gobinda, Prakasam, Thirumurugan, Alkhatib, Nour, AbdulHalim, Rasha G., Chandra, Falguni, Sharma, Sudhir Kumar, Garai, Bikash, Varghese, Sabu, Addicoat, Matthew A., Ravaux, Florent, Pasricha, Renu, Jagannathan, Ramesh, Saleh, Na’il, Kirmizialtin, Serdal, Olson, Mark A., Trabolsi, Ali
Publicado 2023