Unsupervised statistical clustering of environmental shotgun sequences

por Kislyuk, Andrey, Bhatnagar, Srijak, Dushoff, Jonathan, Weitz, Joshua S
Publicado 2009

Genomic fluidity: an integrative view of gene diversity within microbial populations

por Kislyuk, Andrey O, Haegeman, Bart, Bergman, Nicholas H, Weitz, Joshua S
Publicado 2011

Meningococcus genome informatics platform: a system for analyzing multilocus sequence typing data

por Katz, Lee S., Bolen, Chris R., Harcourt, Brian H., Schmink, Susanna, Wang, Xin, Kislyuk, Andrey, Taylor, Robert T., Mayer, Leonard W., Jordan, I. King
Publicado 2009

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

por Clark, Tyson A., Murray, Iain A., Morgan, Richard D., Kislyuk, Andrey O., Spittle, Kristi E., Boitano, Matthew, Fomenkov, Alexey, Roberts, Richard J., Korlach, Jonas
Publicado 2012

Neisseria Base: a comparative genomics database for Neisseria meningitidis

por Katz, Lee S., Humphrey, Jay C., Conley, Andrew B., Nelakuditi, Viswateja, Kislyuk, Andrey O., Agrawal, Sonia, Jayaraman, Pushkala, Harcourt, Brian H., Olsen-Rasmussen, Melissa A., Frace, Michael, Sharma, Nitya V., Mayer, Leonard W., Jordan, I. King
Publicado 2011

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

por Schadt, Eric E., Banerjee, Onureena, Fang, Gang, Feng, Zhixing, Wong, Wing H., Zhang, Xuegong, Kislyuk, Andrey, Clark, Tyson A., Luong, Khai, Keren-Paz, Alona, Chess, Andrew, Kumar, Vipin, Chen-Plotkin, Alice, Sondheimer, Neal, Korlach, Jonas, Kasarskis, Andrew
Publicado 2013

A computational genomics pipeline for prokaryotic sequencing projects

por Kislyuk, Andrey O., Katz, Lee S., Agrawal, Sonia, Hagen, Matthew S., Conley, Andrew B., Jayaraman, Pushkala, Nelakuditi, Viswateja, Humphrey, Jay C., Sammons, Scott A., Govil, Dhwani, Mair, Raydel D., Tatti, Kathleen M., Tondella, Maria L., Harcourt, Brian H., Mayer, Leonard W., Jordan, I. King
Publicado 2010

IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring

por Kalantar, Katrina L, Carvalho, Tiago, de Bourcy, Charles F A, Dimitrov, Boris, Dingle, Greg, Egger, Rebecca, Han, Julie, Holmes, Olivia B, Juan, Yun-Fang, King, Ryan, Kislyuk, Andrey, Lin, Michael F, Mariano, Maria, Morse, Todd, Reynoso, Lucia V, Cruz, David Rissato, Sheu, Jonathan, Tang, Jennifer, Wang, James, Zhang, Mark A, Zhong, Emily, Ahyong, Vida, Lay, Sreyngim, Chea, Sophana, Bohl, Jennifer A, Manning, Jessica E, Tato, Cristina M, DeRisi, Joseph L
Publicado 2020

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

por Park, Daniel J., Dudas, Gytis, Wohl, Shirlee, Goba, Augustine, Whitmer, Shannon L.M., Andersen, Kristian G., Sealfon, Rachel S., Ladner, Jason T., Kugelman, Jeffrey R., Matranga, Christian B., Winnicki, Sarah M., Qu, James, Gire, Stephen K., Gladden-Young, Adrianne, Jalloh, Simbirie, Nosamiefan, Dolo, Yozwiak, Nathan L., Moses, Lina M., Jiang, Pan-Pan, Lin, Aaron E., Schaffner, Stephen F., Bird, Brian, Towner, Jonathan, Mamoh, Mambu, Gbakie, Michael, Kanneh, Lansana, Kargbo, David, Massally, James L.B., Kamara, Fatima K., Konuwa, Edwin, Sellu, Josephine, Jalloh, Abdul A., Mustapha, Ibrahim, Foday, Momoh, Yillah, Mohamed, Erickson, Bobbie R., Sealy, Tara, Blau, Dianna, Paddock, Christopher, Brault, Aaron, Amman, Brian, Basile, Jane, Bearden, Scott, Belser, Jessica, Bergeron, Eric, Campbell, Shelley, Chakrabarti, Ayan, Dodd, Kimberly, Flint, Mike, Gibbons, Aridth, Goodman, Christin, Klena, John, McMullan, Laura, Morgan, Laura, Russell, Brandy, Salzer, Johanna, Sanchez, Angela, Wang, David, Jungreis, Irwin, Tomkins-Tinch, Christopher, Kislyuk, Andrey, Lin, Michael F., Chapman, Sinead, MacInnis, Bronwyn, Matthews, Ashley, Bochicchio, James, Hensley, Lisa E., Kuhn, Jens H., Nusbaum, Chad, Schieffelin, John S., Birren, Bruce W., Forget, Marc, Nichol, Stuart T., Palacios, Gustavo F., Ndiaye, Daouda, Happi, Christian, Gevao, Sahr M., Vandi, Mohamed A., Kargbo, Brima, Holmes, Edward C., Bedford, Trevor, Gnirke, Andreas, Ströher, Ute, Rambaut, Andrew, Garry, Robert F., Sabeti, Pardis C.
Publicado 2015