Getting Started in Computational Immunology

por Kleinstein, Steven H.
Publicado 2008

Practical guidelines for B-cell receptor repertoire sequencing analysis

por Yaari, Gur, Kleinstein, Steven H.
Publicado 2015

A spectral clustering-based method for identifying clones from high-throughput B cell repertoire sequencing data

por Nouri, Nima, Kleinstein, Steven H
Publicado 2018

Optimized Threshold Inference for Partitioning of Clones From High-Throughput B Cell Repertoire Sequencing Data

por Nouri, Nima, Kleinstein, Steven H.
Publicado 2018

Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data

por Nouri, Nima, Kleinstein, Steven H.
Publicado 2020

Quantifying selection in high-throughput Immunoglobulin sequencing data sets

por Yaari, Gur, Uduman, Mohamed, Kleinstein, Steven H.
Publicado 2012

Predictive overfitting in immunological applications: Pitfalls and solutions

por Gygi, Jeremy P., Kleinstein, Steven H., Guan, Leying
Publicado 2023

Cell subset prediction for blood genomic studies

por Bolen, Christopher R, Uduman, Mohamed, Kleinstein, Steven H
Publicado 2011

Alignment free identification of clones in B cell receptor repertoires

por Lindenbaum, Ofir, Nouri, Nima, Kluger, Yuval, Kleinstein, Steven H
Publicado 2020

Phylogenetic analysis of migration, differentiation, and class switching in B cells

por Hoehn, Kenneth B., Pybus, Oliver G., Kleinstein, Steven H.
Publicado 2022

Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations

por Yaari, Gur, Bolen, Christopher R., Thakar, Juilee, Kleinstein, Steven H.
Publicado 2013

Inferring B cell phylogenies from paired heavy and light chain BCR sequences with Dowser

por Jensen, Cole G., Sumner, Jacob A., Kleinstein, Steven H., Hoehn, Kenneth B.
Publicado 2023

RAG1 targeting in the genome is dominated by chromatin interactions mediated by the non-core regions of RAG1 and RAG2

por Maman, Yaakov, Teng, Grace, Seth, Rashu, Kleinstein, Steven H., Schatz, David G.
Publicado 2016

Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE)

por Meng, Hailong, Yaari, Gur, Bolen, Christopher R., Avey, Stefan, Kleinstein, Steven H.
Publicado 2019

A pipeline for the retrieval and extraction of domain-specific information with application to COVID-19 immune signatures

por Newton, Adam J. H., Chartash, David, Kleinstein, Steven H., McDougal, Robert A.
Publicado 2023

Comparative analysis of anti-viral transcriptomics reveals novel effects of influenza immune antagonism

por Thakar, Juilee, Hartmann, Boris M., Marjanovic, Nada, Sealfon, Stuart C., Kleinstein, Steven H.
Publicado 2015

High-throughput single-cell profiling of B cell responses following inactivated influenza vaccination in young and older adults

por Wang, Meng, Jiang, Ruoyi, Mohanty, Subhasis, Meng, Hailong, Shaw, Albert C., Kleinstein, Steven H.
Publicado 2023

LinkedImm: a linked data graph database for integrating immunological data

por Bukhari, Syed Ahmad Chan, Pawar, Shrikant, Mandell, Jeff, Kleinstein, Steven H., Cheung, Kei-Hoi
Publicado 2021

Gene Expression Analysis of Forskolin Treated Basilar Papillae Identifies MicroRNA181a as a Mediator of Proliferation

por Frucht, Corey S., Uduman, Mohamed, Duke, Jamie L., Kleinstein, Steven H., Santos-Sacchi, Joseph, Navaratnam, Dhasakumar S.
Publicado 2010

Detecting selection in immunoglobulin sequences

por Uduman, Mohamed, Yaari, Gur, Hershberg, Uri, Stern, Jacob A., Shlomchik, Mark J., Kleinstein, Steven H.
Publicado 2011