2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

por Parker, Matthew T., Knop, Katarzyna, Barton, Geoffrey J., Simpson, Gordon G.
Publicado 2021

Active 5΄ splice sites regulate the biogenesis efficiency of Arabidopsis microRNAs derived from intron-containing genes

por Knop, Katarzyna, Stepien, Agata, Barciszewska-Pacak, Maria, Taube, Michal, Bielewicz, Dawid, Michalak, Michal, Borst, Jan W., Jarmolowski, Artur, Szweykowska-Kulinska, Zofia
Publicado 2017

A stable tRNA-like molecule is generated from the long noncoding RNA GUT15 in Arabidopsis

por Plewka, Patrycja, Thompson, Agnieszka, Szymanski, Maciej, Nuc, Przemyslaw, Knop, Katarzyna, Rasinska, Agnieszka, Bialkowska, Aleksandra, Szweykowska-Kulinska, Zofia, Karlowski, Wojciech M., Jarmolowski, Artur
Publicado 2018

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m(6)A modification

por Parker, Matthew T, Knop, Katarzyna, Sherwood, Anna V, Schurch, Nicholas J, Mackinnon, Katarzyna, Gould, Peter D, Hall, Anthony JW, Barton, Geoffrey J, Simpson, Gordon G
Publicado 2020

Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses

por Barciszewska-Pacak, Maria, Milanowska, Kaja, Knop, Katarzyna, Bielewicz, Dawid, Nuc, Przemyslaw, Plewka, Patrycja, Pacak, Andrzej M., Vazquez, Franck, Karlowski, Wojciech, Jarmolowski, Artur, Szweykowska-Kulinska, Zofia
Publicado 2015

Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA

por Parker, Matthew T, Knop, Katarzyna, Zacharaki, Vasiliki, Sherwood, Anna V, Tomé, Daniel, Yu, Xuhong, Martin, Pascal GP, Beynon, Jim, Michaels, Scott D, Barton, Geoffrey J, Simpson, Gordon G
Publicado 2021

m(6)A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5’ splice site

por Parker, Matthew T, Soanes, Beth K, Kusakina, Jelena, Larrieu, Antoine, Knop, Katarzyna, Joy, Nisha, Breidenbach, Friedrich, Sherwood, Anna V, Barton, Geoffrey J, Fica, Sebastian M, Davies, Brendan H, Simpson, Gordon G
Publicado 2022

mirEX 2.0 - an integrated environment for expression profiling of plant microRNAs

por Zielezinski, Andrzej, Dolata, Jakub, Alaba, Sylwia, Kruszka, Katarzyna, Pacak, Andrzej, Swida-Barteczka, Aleksandra, Knop, Katarzyna, Stepien, Agata, Bielewicz, Dawid, Pietrykowska, Halina, Sierocka, Izabela, Sobkowiak, Lukasz, Lakomiak, Alicja, Jarmolowski, Artur, Szweykowska-Kulinska, Zofia, Karlowski, Wojciech M.
Publicado 2015

Chromosome evolution and the genetic basis of agronomically important traits in greater yam

por Bredeson, Jessen V., Lyons, Jessica B., Oniyinde, Ibukun O., Okereke, Nneka R., Kolade, Olufisayo, Nnabue, Ikenna, Nwadili, Christian O., Hřibová, Eva, Parker, Matthew, Nwogha, Jeremiah, Shu, Shengqiang, Carlson, Joseph, Kariba, Robert, Muthemba, Samuel, Knop, Katarzyna, Barton, Geoffrey J., Sherwood, Anna V., Lopez-Montes, Antonio, Asiedu, Robert, Jamnadass, Ramni, Muchugi, Alice, Goodstein, David, Egesi, Chiedozie N., Featherston, Jonathan, Asfaw, Asrat, Simpson, Gordon G., Doležel, Jaroslav, Hendre, Prasad S., Van Deynze, Allen, Kumar, Pullikanti Lava, Obidiegwu, Jude E., Bhattacharjee, Ranjana, Rokhsar, Daniel S.
Publicado 2022