Intron-centric estimation of alternative splicing from RNA-seq data

por Pervouchine, Dmitri D., Knowles, David G., Guigó, Roderic
Publicado 2013

Grape RNA-Seq analysis pipeline environment

por Knowles, David G., Röder, Maik, Merkel, Angelika, Guigó, Roderic
Publicado 2013

Fast Computation and Applications of Genome Mappability

por Derrien, Thomas, Estellé, Jordi, Marco Sola, Santiago, Knowles, David G., Raineri, Emanuele, Guigó, Roderic, Ribeca, Paolo
Publicado 2012

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

por Tilgner, Hagen, Knowles, David G., Johnson, Rory, Davis, Carrie A., Chakrabortty, Sudipto, Djebali, Sarah, Curado, João, Snyder, Michael, Gingeras, Thomas R., Guigó, Roderic
Publicado 2012

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

por Derrien, Thomas, Johnson, Rory, Bussotti, Giovanni, Tanzer, Andrea, Djebali, Sarah, Tilgner, Hagen, Guernec, Gregory, Martin, David, Merkel, Angelika, Knowles, David G., Lagarde, Julien, Veeravalli, Lavanya, Ruan, Xiaoan, Ruan, Yijun, Lassmann, Timo, Carninci, Piero, Brown, James B., Lipovich, Leonard, Gonzalez, Jose M., Thomas, Mark, Davis, Carrie A., Shiekhattar, Ramin, Gingeras, Thomas R., Hubbard, Tim J., Notredame, Cedric, Harrow, Jennifer, Guigó, Roderic
Publicado 2012

Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

por Ferreira, Pedro G., Jares, Pedro, Rico, Daniel, Gómez-López, Gonzalo, Martínez-Trillos, Alejandra, Villamor, Neus, Ecker, Simone, González-Pérez, Abel, Knowles, David G., Monlong, Jean, Johnson, Rory, Quesada, Victor, Djebali, Sarah, Papasaikas, Panagiotis, López-Guerra, Mónica, Colomer, Dolors, Royo, Cristina, Cazorla, Maite, Pinyol, Magda, Clot, Guillem, Aymerich, Marta, Rozman, Maria, Kulis, Marta, Tamborero, David, Gouin, Anaïs, Blanc, Julie, Gut, Marta, Gut, Ivo, Puente, Xose S., Pisano, David G., Martin-Subero, José Ignacio, López-Bigas, Nuria, López-Guillermo, Armando, Valencia, Alfonso, López-Otín, Carlos, Campo, Elías, Guigó, Roderic
Publicado 2014