Using earth mover’s distance for viral outbreak investigations

por Melnyk, Andrew, Knyazev, Sergey, Vannberg, Fredrik, Bunimovich, Leonid, Skums, Pavel, Zelikovsky, Alex
Publicado 2020

Inference of genetic relatedness between viral quasispecies from sequencing data

por Glebova, Olga, Knyazev, Sergey, Melnyk, Andrew, Artyomenko, Alexander, Khudyakov, Yury, Zelikovsky, Alex, Skums, Pavel
Publicado 2017

MicrobeTrace: Retooling molecular epidemiology for rapid public health response

por Campbell, Ellsworth M., Boyles, Anthony, Shankar, Anupama, Kim, Jay, Knyazev, Sergey, Cintron, Roxana, Switzer, William M.
Publicado 2021

Creation and Use of Highly Adaptive Productive and Technological Red Currant Genotypes to Improve the Assortment and Introduction into Different Ecological and Geographical Zones

por Panfilova, Olga, Kahramanoğlu, Ibrahim, Ondrasek, Gabrijel, Okatan, Volkan, Ryago, Nelly, Tsoy, Mikhail, Golyaeva, Olga, Knyazev, Sergey
Publicado 2022

The UCLA ATLAS Community Health Initiative: Promoting precision health research in a diverse biobank

por Johnson, Ruth, Ding, Yi, Bhattacharya, Arjun, Knyazev, Sergey, Chiu, Alec, Lajonchere, Clara, Geschwind, Daniel H., Pasaniuc, Bogdan
Publicado 2023

Molecular Epidemiology of the HIV-1 Subtype B Sub-Epidemic in Bulgaria

por Alexiev, Ivailo, M. Campbell, Ellsworth, Knyazev, Sergey, Pan, Yi, Grigorova, Lyubomira, Dimitrova, Reneta, Partsuneva, Aleksandra, Gancheva, Anna, Kostadinova, Asya, Seguin-Devaux, Carole, M. Switzer, William
Publicado 2020

Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction

por Knyazev, Sergey, Tsyvina, Viachaslau, Shankar, Anupama, Melnyk, Andrew, Artyomenko, Alexander, Malygina, Tatiana, Porozov, Yuri B, Campbell, Ellsworth M, Switzer, William M, Skums, Pavel, Mangul, Serghei, Zelikovsky, Alex
Publicado 2021

Molecular Epidemiological Analysis of the Origin and Transmission Dynamics of the HIV-1 CRF01_AE Sub-Epidemic in Bulgaria

por Alexiev, Ivailo, Campbell, Ellsworth M., Knyazev, Sergey, Pan, Yi, Grigorova, Lyubomira, Dimitrova, Reneta, Partsuneva, Aleksandra, Gancheva, Anna, Kostadinova, Asya, Seguin-Devaux, Carole, Elenkov, Ivaylo, Yancheva, Nina, Switzer, William M.
Publicado 2021

Technology dictates algorithms: recent developments in read alignment

por Alser, Mohammed, Rotman, Jeremy, Deshpande, Dhrithi, Taraszka, Kodi, Shi, Huwenbo, Baykal, Pelin Icer, Yang, Harry Taegyun, Xue, Victor, Knyazev, Sergey, Singer, Benjamin D., Balliu, Brunilda, Koslicki, David, Skums, Pavel, Zelikovsky, Alex, Alkan, Can, Mutlu, Onur, Mangul, Serghei
Publicado 2021

Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

por Sonrel, Anthony, Luetge, Almut, Soneson, Charlotte, Mallona, Izaskun, Germain, Pierre-Luc, Knyazev, Sergey, Gilis, Jeroen, Gerber, Reto, Seurinck, Ruth, Paul, Dominique, Sonder, Emanuel, Crowell, Helena L., Fanaswala, Imran, Al-Ajami, Ahmad, Heidari, Elyas, Schmeing, Stephan, Milosavljevic, Stefan, Saeys, Yvan, Mangul, Serghei, Robinson, Mark D.
Publicado 2023

Unlocking capacities of viral genomics for the COVID-19 pandemic response

por Knyazev, Sergey, Chhugani, Karishma, Sarwal, Varuni, Ayyala, Ram, Singh, Harman, Karthikeyan, Smruthi, Deshpande, Dhrithi, Comarova, Zoia, Lu, Angela, Porozov, Yuri, Wu, Aiping, Abedalthagafi, Malak S., Nagaraj, Shivashankar H., Smith, Adam L., Skums, Pavel, Ladner, Jason, Lam, Tommy Tsan-Yuk, Wu, Nicholas C., Zelikovsky, Alex, Knight, Rob, Crandall, Keith A., Mangul, Serghei
Publicado 2021

Leveraging genomic diversity for discovery in an electronic health record linked biobank: the UCLA ATLAS Community Health Initiative

por Johnson, Ruth, Ding, Yi, Venkateswaran, Vidhya, Bhattacharya, Arjun, Boulier, Kristin, Chiu, Alec, Knyazev, Sergey, Schwarz, Tommer, Freund, Malika, Zhan, Lingyu, Burch, Kathryn S., Caggiano, Christa, Hill, Brian, Rakocz, Nadav, Balliu, Brunilda, Denny, Christopher T., Sul, Jae Hoon, Zaitlen, Noah, Arboleda, Valerie A., Halperin, Eran, Sankararaman, Sriram, Butte, Manish J., Lajonchere, Clara, Geschwind, Daniel H., Pasaniuc, Bogdan
Publicado 2022

Author Correction: Leveraging genomic diversity for discovery in an electronic health record linked biobank: the UCLA ATLAS Community Health Initiative

por Johnson, Ruth, Ding, Yi, Venkateswaran, Vidhya, Bhattacharya, Arjun, Boulier, Kristin, Chiu, Alec, Knyazev, Sergey, Schwarz, Tommer, Freund, Malika, Zhan, Lingyu, Burch, Kathryn S., Caggiano, Christa, Hill, Brian, Rakocz, Nadav, Balliu, Brunilda, Denny, Christopher T., Sul, Jae Hoon, Zaitlen, Noah, Arboleda, Valerie A., Halperin, Eran, Sankararaman, Sriram, Butte, Manish J., Lajonchere, Clara, Geschwind, Daniel H., Pasaniuc, Bogdan
Publicado 2022

Benchmarking of computational error-correction methods for next-generation sequencing data

por Mitchell, Keith, Brito, Jaqueline J., Mandric, Igor, Wu, Qiaozhen, Knyazev, Sergey, Chang, Sei, Martin, Lana S., Karlsberg, Aaron, Gerasimov, Ekaterina, Littman, Russell, Hill, Brian L., Wu, Nicholas C., Yang, Harry Taegyun, Hsieh, Kevin, Chen, Linus, Littman, Eli, Shabani, Taylor, Enik, German, Yao, Douglas, Sun, Ren, Schroeder, Jan, Eskin, Eleazar, Zelikovsky, Alex, Skums, Pavel, Pop, Mihai, Mangul, Serghei
Publicado 2020

Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure

por Rando, Halie M., MacLean, Adam L., Lee, Alexandra J., Lordan, Ronan, Ray, Sandipan, Bansal, Vikas, Skelly, Ashwin N., Sell, Elizabeth, Dziak, John J., Shinholster, Lamonica, McGowan, Lucy D’Agostino, Guebila, Marouen Ben, Wellhausen, Nils, Knyazev, Sergey, Boca, Simina M., Capone, Stephen, Qi, Yanjun, Park, YoSon, Sun, Yuchen, Mai, David, Boerckel, Joel D, Brueffer, Christian, Byrd, James Brian, Kamil, Jeremy P., Wang, Jinhui, Velazquez, Ryan, Szeto, Gregory L, Barton, John P., Goel, Rishi Raj, Mangul, Serghei, Lubiana, Tiago, Gitter, Anthony, Greene, Casey S.
Publicado 2021

Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure

por Rando, Halie M., MacLean, Adam L., Lee, Alexandra J., Lordan, Ronan, Ray, Sandipan, Bansal, Vikas, Skelly, Ashwin N., Sell, Elizabeth, Dziak, John J., Shinholster, Lamonica, D’Agostino McGowan, Lucy, Ben Guebila, Marouen, Wellhausen, Nils, Knyazev, Sergey, Boca, Simina M., Capone, Stephen, Qi, Yanjun, Park, YoSon, Mai, David, Sun, Yuchen, Boerckel, Joel D., Brueffer, Christian, Byrd, James Brian, Kamil, Jeremy P., Wang, Jinhui, Velazquez, Ryan, Szeto, Gregory L., Barton, John P., Goel, Rishi Raj, Mangul, Serghei, Lubiana, Tiago, Gitter, Anthony, Greene, Casey S.
Publicado 2021

Correction for Rando et al., “Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure”

por Rando, Halie M., MacLean, Adam L., Lee, Alexandra J., Lordan, Ronan, Ray, Sandipan, Bansal, Vikas, Skelly, Ashwin N., Sell, Elizabeth, Dziak, John J., Shinholster, Lamonica, D’Agostino McGowan, Lucy, Ben Guebila, Marouen, Wellhausen, Nils, Knyazev, Sergey, Boca, Simina M., Capone, Stephen, Qi, Yanjun, Park, YoSon, Mai, David, Sun, Yuchen, Boerckel, Joel D., Brueffer, Christian, Byrd, James Brian, Kamil, Jeremy P., Wang, Jinhui, Velazquez, Ryan, Szeto, Gregory L., Barton, John P., Goel, Rishi Raj, Mangul, Serghei, Lubiana, Tiago, Gitter, Anthony, Greene, Casey S.
Publicado 2022