Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis

por Sun, Zhifu, Cunningham, Julie, Slager, Susan, Kocher, Jean-Pierre
Publicado 2015

The impact of pharmacokinetic gene profiles across human cancers

por Zimmermann, Michael T., Therneau, Terry M., Kocher, Jean-Pierre A.
Publicado 2018

Correction to: the impact of pharmacokinetic gene profiles across human cancers

por Zimmermann, Michael T., Therneau, Terry M., Kocher, Jean-Pierre A.
Publicado 2018

DNA methylation signature predicts cancer response to demethylation agents from profiling diverse cancer cell lines

por Sun, Zhifu, Wang, Xuewei, Vedell, Pete, Kocher, Jean‐Pierre
Publicado 2022

Genome-Wide Analysis of Loss of Heterozygosity in Breast Infiltrating Ductal Carcinoma Distant Normal Tissue Highlights Arm Specific Enrichment and Expansion across Tumor Stages

por Ruan, Xiaoyang, Liu, Hongfang, Boardman, Lisa, Kocher, Jean-Pierre A.
Publicado 2014

Indel sensitive and comprehensive variant/mutation detection from RNA sequencing data for precision medicine

por Prodduturi, Naresh, Bhagwate, Aditya, Kocher, Jean-Pierre A., Sun, Zhifu
Publicado 2018

Detection and visualization of complex structural variants from long reads

por Stephens, Zachary, Wang, Chen, Iyer, Ravishankar K., Kocher, Jean-Pierre
Publicado 2018

From Days to Hours: Reporting Clinically Actionable Variants from Whole Genome Sequencing

por Middha, Sumit, Baheti, Saurabh, Hart, Steven N., Kocher, Jean-Pierre A.
Publicado 2014

Predict drug sensitivity of cancer cells with pathway activity inference

por Wang, Xuewei, Sun, Zhifu, Zimmermann, Michael T., Bugrim, Andrej, Kocher, Jean-Pierre
Publicado 2019

Determining mutational burden and signature using RNA-seq from tumor-only samples

por Jessen, Erik, Liu, Yuanhang, Davila, Jaime, Kocher, Jean-Pierre, Wang, Chen
Publicado 2021

Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations

por Sun, Zhifu, Bhagwate, Aditya, Prodduturi, Naresh, Yang, Ping, Kocher, Jean-Pierre A
Publicado 2017

Spatial normalization improves the quality of genotype calling for Affymetrix SNP 6.0 arrays

por Chai, High Seng, Therneau, Terry M, Bailey, Kent R, Kocher, Jean-Pierre A
Publicado 2010

Mass Homozygotes Accumulation in the NCI-60 Cancer Cell Lines As Compared to HapMap Trios, and Relation to Fragile Site Location

por Ruan, Xiaoyang, Kocher, Jean-Pierre A., Pommier, Yves, Liu, Hongfang, Reinhold, William C.
Publicado 2012

Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature

por Ravikumar, Komandur Elayavilli, Wagholikar, Kavishwar B., Li, Dingcheng, Kocher, Jean-Pierre, Liu, Hongfang
Publicado 2015

Erratum to: Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature

por Ravikumar, Komandur Elayavilli, Wagholikar, Kavishwar B., Li, Dingcheng, Kocher, Jean-Pierre, Liu, Hongfang
Publicado 2016

UClncR: Ultrafast and comprehensive long non-coding RNA detection from RNA-seq

por Sun, Zhifu, Nair, Asha, Chen, Xianfeng, Prodduturi, Naresh, Wang, Junwen, Kocher, Jean-Pierre
Publicado 2017

Author Correction: UClncR: Ultrafast and comprehensive long non-coding RNA detection from RNA-seq

por Sun, Zhifu, Nair, Asha, Chen, Xianfeng, Prodduturi, Naresh, Wang, Junwen, Kocher, Jean-Pierre
Publicado 2018

Re-Evaluate Fusion Genes in Prostate Cancer

por Wei, Ting, Lu, Ji, Ma, Tao, Huang, Haojie, Kocher, Jean-Pierre, Wang, Liguo
Publicado 2021

SNPPicker: High quality tag SNP selection across multiple populations

por Sicotte, Hugues, Rider, David N, Poland, Gregory A, Dhiman, Neelam, Kocher, Jean-Pierre A
Publicado 2011

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

por Wang, Liguo, Park, Hyun Jung, Dasari, Surendra, Wang, Shengqin, Kocher, Jean-Pierre, Li, Wei
Publicado 2013