FAIR data station for lightweight metadata management and validation of omics studies

por Nijsse, Bart, Schaap, Peter J, Koehorst, Jasper J
Publicado 2023

Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains

por te Molder, Dennie, Poncheewin, Wasin, Schaap, Peter J., Koehorst, Jasper J.
Publicado 2021

Effects of Argonaute on Gene Expression in Thermus thermophilus

por Swarts, Daan C., Koehorst, Jasper J., Westra, Edze R., Schaap, Peter J., van der Oost, John
Publicado 2015

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View

por Saccenti, Edoardo, Nieuwenhuijse, David, Koehorst, Jasper J., Martins dos Santos, Vitor A. P., Schaap, Peter J.
Publicado 2015

Galactocerebroside biosynthesis pathways of Mycoplasma species: an antigen triggering Guillain–Barré–Stohl syndrome

por Gaspari, Erika, Koehorst, Jasper J., Frey, Joachim, Martins dos Santos, Vitor A.P., Suarez‐Diez, Maria
Publicado 2021

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics

por Koehorst, Jasper J., Saccenti, Edoardo, Schaap, Peter J., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria
Publicado 2017

Diversity of tryptophan halogenases in sponges of the genus Aplysina

por Gutleben, Johanna, Koehorst, Jasper J, McPherson, Kyle, Pomponi, Shirley, Wijffels, René H, Smidt, Hauke, Sipkema, Detmer
Publicado 2019

The Constructor: a web application optimizing cloning strategies based on modules from the registry of standard biological parts

por Hesselman, Matthijn C, Koehorst, Jasper J, Slijkhuis, Thijs, Odoni, Dorett I, Hugenholtz, Floor, van Passel, Mark W J
Publicado 2012

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource

por van Dam, Jesse CJ, Koehorst, Jasper J, Schaap, Peter J, Martins dos Santos, Vitor AP, Suarez-Diez, Maria
Publicado 2015

Complete Genome Sequence of Akkermansia glycaniphila Strain Pyt(T), a Mucin-Degrading Specialist of the Reticulated Python Gut

por Ouwerkerk, Janneke P., Koehorst, Jasper J., Schaap, Peter J., Ritari, Jarmo, Paulin, Lars, Belzer, Clara, de Vos, Willem M.
Publicado 2017

NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis

por Poncheewin, Wasin, Hermes, Gerben D. A., van Dam, Jesse C. J., Koehorst, Jasper J., Smidt, Hauke, Schaap, Peter J.
Publicado 2020

Assembly and Comparison of Ca. Neoehrlichia mikurensis Genomes

por Azagi, Tal, Dirks, Ron P., Yebra-Pimentel, Elena S., Schaap, Peter J., Koehorst, Jasper J., Esser, Helen J., Sprong, Hein
Publicado 2022

Reverse Methanogenesis and Respiration in Methanotrophic Archaea

por Timmers, Peer H. A., Welte, Cornelia U., Koehorst, Jasper J., Plugge, Caroline M., Jetten, Mike S. M., Stams, Alfons J. M.
Publicado 2017

Metabolic shift induced by synthetic co-cultivation promotes high yield of chain elongated acids from syngas

por Diender, Martijn, Parera Olm, Ivette, Gelderloos, Marten, Koehorst, Jasper J., Schaap, Peter J., Stams, Alfons J. M., Sousa, Diana Z.
Publicado 2019

SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles

por Koehorst, Jasper J, van Dam, Jesse C J, Saccenti, Edoardo, Martins dos Santos, Vitor A P, Suarez-Diez, Maria, Schaap, Peter J
Publicado 2018

A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

por Kampers, Linde F. C., Koehorst, Jasper J., van Heck, Ruben J. A., Suarez-Diez, Maria, Stams, Alfons J. M., Schaap, Peter J.
Publicado 2021

Persistence of Functional Protein Domains in Mycoplasma Species and their Role in Host Specificity and Synthetic Minimal Life

por Kamminga, Tjerko, Koehorst, Jasper J., Vermeij, Paul, Slagman, Simen-Jan, Martins dos Santos, Vitor A. P., Bijlsma, Jetta J. E., Schaap, Peter J.
Publicado 2017

The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation

por van Dam, Jesse C. J., Koehorst, Jasper J., Vik, Jon Olav, Martins dos Santos, Vitor A. P., Schaap, Peter J., Suarez-Diez, Maria
Publicado 2019

Genomic convergence between Akkermansia muciniphila in different mammalian hosts

por Geerlings, Sharon Y., Ouwerkerk, Janneke P., Koehorst, Jasper J., Ritari, Jarmo, Aalvink, Steven, Stecher, Bärbel, Schaap, Peter J., Paulin, Lars, de Vos, Willem M., Belzer, Clara
Publicado 2021

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

por Koehorst, Jasper J., van Dam, Jesse C. J., van Heck, Ruben G. A., Saccenti, Edoardo, dos Santos, Vitor A. P. Martins, Suarez-Diez, Maria, Schaap, Peter J.
Publicado 2016