Pipeliner: A Nextflow-Based Framework for the Definition of Sequencing Data Processing Pipelines

por Federico, Anthony, Karagiannis, Tanya, Karri, Kritika, Kishore, Dileep, Koga, Yusuke, Campbell, Joshua D., Monti, Stefano
Publicado 2019

Decontamination of ambient RNA in single-cell RNA-seq with DecontX

por Yang, Shiyi, Corbett, Sean E., Koga, Yusuke, Wang, Zhe, Johnson, W Evan, Yajima, Masanao, Campbell, Joshua D.
Publicado 2020

Celda: a Bayesian model to perform co-clustering of genes into modules and cells into subpopulations using single-cell RNA-seq data

por Wang, Zhe, Yang, Shiyi, Koga, Yusuke, Corbett, Sean E, Shea, Conor V, Johnson, W Evan, Yajima, Masanao, Campbell, Joshua D
Publicado 2022

Association between Reduction of Plasma Adiponectin Levels and Risk of Bacterial Infection after Gastric Cancer Surgery

por Yamamoto, Hiroshi, Maeda, Kazuhisa, Uji, Yoshitaka, Tsuchihashi, Hiroshi, Mori, Tsuyoshi, Shimizu, Tomoharu, Endo, Yoshihiro, Kadota, Aya, Miura, Katsuyuki, Koga, Yusuke, Ito, Toshinori, Tani, Tohru
Publicado 2013

Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data

por Hong, Rui, Koga, Yusuke, Bandyadka, Shruthi, Leshchyk, Anastasia, Wang, Yichen, Akavoor, Vidya, Cao, Xinyun, Sarfraz, Irzam, Wang, Zhe, Alabdullatif, Salam, Jansen, Frederick, Yajima, Masanao, Johnson, W. Evan, Campbell, Joshua D.
Publicado 2022

Interactive analysis of single-cell data using flexible workflows with SCTK2

por Wang, Yichen, Sarfraz, Irzam, Pervaiz, Nida, Hong, Rui, Koga, Yusuke, Akavoor, Vidya, Cao, Xinyun, Alabdullatif, Salam, Zaib, Syed Ali, Wang, Zhe, Jansen, Frederick, Yajima, Masanao, Johnson, W. Evan, Campbell, Joshua D.
Publicado 2023

Elevated T cell repertoire diversity is associated with progression of lung squamous cell premalignant lesions

por Maoz, Asaf, Merenstein, Carter, Koga, Yusuke, Potter, Austin, Gower, Adam C, Liu, Gang, Zhang, Sherry, Liu, Hanqiao, Stevenson, Christopher, Spira, Avrum, Reid, Mary E, Campbell, Joshua D, Mazzilli, Sarah A, Lenburg, Marc E, Beane, Jennifer
Publicado 2021

Whole genome doubling confers unique genetic vulnerabilities on tumor cells

por Quinton, Ryan J., DiDomizio, Amanda, Vittoria, Marc A., Kotýnková, Kristýna, Ticas, Carlos J., Patel, Sheena, Koga, Yusuke, Vakhshoorzadeh, Jasmine, Hermance, Nicole, Kuroda, Taruho S., Parulekar, Neha, Taylor, Alison M., Manning, Amity L., Campbell, Joshua D., Ganem, Neil J.
Publicado 2021