MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations

por Keilwagen, Jens, Baumbach, Jan, Kohl, Thomas A, Grosse, Ivo
Publicado 2009

Blind spot in endocarditis guidelines: Mycobacterium chimaera prosthetic valve endocarditis after cardiac surgery—a case series

por Trauth, Janina, Matt, Ulrich, Kohl, Thomas A, Niemann, Stefan, Herold, Susanne
Publicado 2023

From Corynebacterium glutamicum to Mycobacterium tuberculosis—towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet

por Krawczyk, Justina, Kohl, Thomas A., Goesmann, Alexander, Kalinowski, Jörn, Baumbach, Jan
Publicado 2009

Harmonized Genome Wide Typing of Tubercle Bacilli Using a Web-Based Gene-By-Gene Nomenclature System

por Kohl, Thomas A., Harmsen, Dag, Rothgänger, Jörg, Walker, Timothy, Diel, Roland, Niemann, Stefan
Publicado 2018

Delineating Mycobacterium abscessus population structure and transmission employing high-resolution core genome multilocus sequence typing

por Diricks, Margo, Merker, Matthias, Wetzstein, Nils, Kohl, Thomas A., Niemann, Stefan, Maurer, Florian P.
Publicado 2022

Mycobacterium abscessus subsp. abscessus Is Capable of Degrading Pseudomonas aeruginosa Quinolone Signals

por Birmes, Franziska S., Wolf, Timo, Kohl, Thomas A., Rüger, Kai, Bange, Franz, Kalinowski, Jörn, Fetzner, Susanne
Publicado 2017

Tracing the Spread of Clostridium difficile Ribotype 027 in Germany Based on Bacterial Genome Sequences

por Steglich, Matthias, Nitsche, Andreas, von Müller, Lutz, Herrmann, Mathias, Kohl, Thomas A., Niemann, Stefan, Nübel, Ulrich
Publicado 2015

Detection of low-frequency resistance-mediating SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains with binoSNP

por Dreyer, Viola, Utpatel, Christian, Kohl, Thomas A., Barilar, Ivan, Gröschel, Matthias I., Feuerriegel, Silke, Niemann, Stefan
Publicado 2020

Survival of hypoxia-induced dormancy is not a common feature of all strains of the Mycobacterium tuberculosis complex

por Tizzano, Barbara, Dallenga, Tobias K., Utpatel, Christian, Behrends, Jochen, Homolka, Susanne, Kohl, Thomas A., Niemann, Stefan
Publicado 2021

Whole-Genome Sequencing for Risk Assessment of Long-term Shiga Toxin–producing Escherichia coli

por Knobloch, Johannes K.-M., Niemann, Stefan, Kohl, Thomas A., Lindner, Ulrich, Nitschke, Martin, Sayk, Friedhelm, Solbach, Werner
Publicado 2014

Drug-resistance profiling and transmission dynamics of multidrug-resistant Mycobacterium tuberculosis in Saudi Arabia revealed by whole genome sequencing

por Al-Ghafli, Hawra, Kohl, Thomas A, Merker, Matthias, Varghese, Bright, Halees, Anason, Niemann, Stefan, Al-Hajoj, Sahal
Publicado 2018

Insertion and deletion evolution reflects antibiotics selection pressure in a Mycobacterium tuberculosis outbreak

por Godfroid, Maxime, Dagan, Tal, Merker, Matthias, Kohl, Thomas A., Diel, Roland, Maurer, Florian P., Niemann, Stefan, Kupczok, Anne
Publicado 2020

Longitudinal Outbreak of Multidrug-Resistant Tuberculosis in a Hospital Setting, Serbia

por Arandjelović, Irena, Merker, Matthias, Richter, Elvira, Kohl, Thomas A., Savić, Branislava, Soldatović, Ivan, Wirth, Thierry, Vuković, Dragana, Niemann, Stefan
Publicado 2019

Analysis of Phylogenetic Variation of Stenotrophomonas maltophilia Reveals Human-Specific Branches

por Steinmann, Joerg, Mamat, Uwe, Abda, Ebrahim M., Kirchhoff, Lisa, Streit, Wolfgang R., Schaible, Ulrich E., Niemann, Stefan, Kohl, Thomas A.
Publicado 2018

Accuracy of whole-genome sequencing to determine recent tuberculosis transmission: an 11-year population-based study in Hamburg, Germany

por Diel, Roland, Kohl, Thomas A., Maurer, Florian P., Merker, Matthias, Meywald Walter, Karen, Hannemann, Jörg, Nienhaus, Albert, Supply, Philip, Niemann, Stefan
Publicado 2019

Transmission Dynamics of a Mycobacterium tuberculosis Complex Outbreak in an Indigenous Population in the Colombian Amazon Region

por Pérez-Llanos, Francy J., Dreyer, Viola, Barilar, Ivan, Utpatel, Christian, Kohl, Thomas A., Murcia, Martha Isabel, Homolka, Susanne, Merker, Matthias, Niemann, Stefan
Publicado 2023

Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

por Diricks, Margo, Kohl, Thomas A., Käding, Nadja, Leshchinskiy, Vladislav, Hauswaldt, Susanne, Jiménez Vázquez, Omar, Utpatel, Christian, Niemann, Stefan, Rupp, Jan, Merker, Matthias
Publicado 2022

Correction to: Whole genome sequencing-based classifcation of human-related Haemophilus species and detection of antimicrobial resistance genes

por Diricks, Margo, Kohl, Thomas A., Käding, Nadja, Leshchinskiy, Vladislav, Hauswaldt, Susanne, Vázquez, Omar Jiménez, Utpatel, Christian, Niemann, Stefan, Rupp, Jan, Merker, Matthias
Publicado 2022

Transmission patterns of rifampicin resistant Mycobacterium tuberculosis complex strains in Cameroon: a genomic epidemiological study

por Merker, Matthias, Egbe, Nkongho F., Ngangue, Yannick R., Vuchas, Comfort, Kohl, Thomas A., Dreyer, Viola, Kuaban, Christopher, Noeske, Jürgen, Niemann, Stefan, Sander, Melissa S.
Publicado 2021

High Interlaboratory Reproducibility and Accuracy of Next-Generation-Sequencing-Based Bacterial Genotyping in a Ring Trial

por Mellmann, Alexander, Andersen, Paal Skytt, Bletz, Stefan, Friedrich, Alexander W., Kohl, Thomas A., Lilje, Berit, Niemann, Stefan, Prior, Karola, Rossen, John W., Harmsen, Dag
Publicado 2017