Advances in chaperone-assisted RNA crystallography using synthetic antibodies

por Banna, Hasan Al, Das, Naba Krishna, Ojha, Manju, Koirala, Deepak
Publicado 2023

Profile of children admitted with seizures in a tertiary care hospital of Western Nepal

por Adhikari, Sudhir, Sathian, Brijesh, Koirala, Deepak Prasad, Rao, Kalipatnam Seshagiri
Publicado 2013

Intramolecular Folding in Human ILPR Fragment with Three C-Rich Repeats

por Dhakal, Soma, Lafontaine, Javonne L., Yu, Zhongbo, Koirala, Deepak, Mao, Hanbin
Publicado 2012

The SARS-CoV-2 Programmed −1 Ribosomal Frameshifting Element Crystal Structure Solved to 2.09 Å Using Chaperone-Assisted RNA Crystallography

por Roman, Christina, Lewicka, Anna, Koirala, Deepak, Li, Nan-Sheng, Piccirilli, Joseph A.
Publicado 2021

Molecular population dynamics of DNA structures in a bcl-2 promoter sequence is regulated by small molecules and the transcription factor hnRNP LL

por Cui, Yunxi, Koirala, Deepak, Kang, HyunJin, Dhakal, Soma, Yangyuoru, Philip, Hurley, Laurence H., Mao, Hanbin
Publicado 2014

Structural and mechanical properties of individual human telomeric G-quadruplexes in molecularly crowded solutions

por Dhakal, Soma, Cui, Yunxi, Koirala, Deepak, Ghimire, Chiran, Kushwaha, Saurabh, Yu, Zhongbo, Yangyuoru, Philip M., Mao, Hanbin
Publicado 2013

Crystal structure of a highly conserved enteroviral 5′ cloverleaf RNA replication element

por Das, Naba K., Hollmann, Nele M., Vogt, Jeff, Sevdalis, Spiridon E., Banna, Hasan A., Ojha, Manju, Koirala, Deepak
Publicado 2023

Mechanical properties of DNA origami nanoassemblies are determined by Holliday junction mechanophores

por Shrestha, Prakash, Emura, Tomoko, Koirala, Deepak, Cui, Yunxi, Hidaka, Kumi, Maximuck, William J, Endo, Masayuki, Sugiyama, Hiroshi, Mao, Hanbin
Publicado 2016

Divalent cations and molecular crowding buffers stabilize G-triplex at physiologically relevant temperatures

por Jiang, Hong-Xin, Cui, Yunxi, Zhao, Ting, Fu, Hai-Wei, Koirala, Deepak, Punnoose, Jibin Abraham, Kong, De-Ming, Mao, Hanbin
Publicado 2015

Affinity maturation of a portable Fab–RNA module for chaperone-assisted RNA crystallography

por Koirala, Deepak, Shelke, Sandip A, Dupont, Marcel, Ruiz, Stormy, DasGupta, Saurja, Bailey, Lucas J, Benner, Steven A, Piccirilli, Joseph A
Publicado 2018

A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites

por Koirala, Deepak, Shao, Yaming, Koldobskaya, Yelena, Fuller, James R., Watkins, Andrew M., Shelke, Sandip A., Pilipenko, Evgeny V., Das, Rhiju, Rice, Phoebe A., Piccirilli, Joseph A.
Publicado 2019

Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif

por Shelke, Sandip A., Shao, Yaming, Laski, Artur, Koirala, Deepak, Weissman, Benjamin P., Fuller, James R., Tan, Xiaohong, Constantin, Tudor P., Waggoner, Alan S., Bruchez, Marcel P., Armitage, Bruce A., Piccirilli, Joseph A.
Publicado 2018