An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information

por Kojima, Kaname, Nagasaki, Masao, Miyano, Satoru
Publicado 2010

BFL: a node and edge betweenness based fast layout algorithm for large scale networks

por Hashimoto, Tatsunori B, Nagasaki, Masao, Kojima, Kaname, Miyano, Satoru
Publicado 2009

An efficient grid layout algorithm for biological networks utilizing various biological attributes

por Kojima, Kaname, Nagasaki, Masao, Jeong, Euna, Kato, Mitsuru, Miyano, Satoru
Publicado 2007

A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes

por Nariai, Naoki, Kojima, Kaname, Mimori, Takahiro, Kawai, Yosuke, Nagasaki, Masao
Publicado 2016

STR-realigner: a realignment method for short tandem repeat regions

por Kojima, Kaname, Kawai, Yosuke, Misawa, Kazuharu, Mimori, Takahiro, Nagasaki, Masao
Publicado 2016

Short tandem repeat number estimation from paired-end reads for multiple individuals by considering coalescent tree

por Kojima, Kaname, Kawai, Yosuke, Nariai, Naoki, Mimori, Takahiro, Hasegawa, Takanori, Nagasaki, Masao
Publicado 2016

AP-SKAT: highly-efficient genome-wide rare variant association test

por Hasegawa, Takanori, Kojima, Kaname, Kawai, Yosuke, Misawa, Kazuharu, Mimori, Takahiro, Nagasaki, Masao
Publicado 2016

Population-scale whole genome sequencing identifies 271 highly polymorphic short tandem repeats from Japanese population

por Hirata, Satoshi, Kojima, Kaname, Misawa, Kazuharu, Gervais, Olivier, Kawai, Yosuke, Nagasaki, Masao
Publicado 2018

A genotype imputation method for de-identified haplotype reference information by using recurrent neural network

por Kojima, Kaname, Tadaka, Shu, Katsuoka, Fumiki, Tamiya, Gen, Yamamoto, Masayuki, Kinoshita, Kengo
Publicado 2020

Facial UV photo imaging for skin pigmentation assessment using conditional generative adversarial networks

por Kojima, Kaname, Shido, Kosuke, Tamiya, Gen, Yamasaki, Kenshi, Kinoshita, Kengo, Aiba, Setsuya
Publicado 2021

Functional clustering of time series gene expression data by Granger causality

por Fujita, André, Severino, Patricia, Kojima, Kaname, Sato, João Ricardo, Patriota, Alexandre Galvão, Miyano, Satoru
Publicado 2012

Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing

por Kojima, Kaname, Imoto, Seiya, Yamaguchi, Rui, Fujita, André, Yamauchi, Mai, Gotoh, Noriko, Miyano, Satoru
Publicado 2012

TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads

por Nariai, Naoki, Kojima, Kaname, Mimori, Takahiro, Sato, Yukuto, Kawai, Yosuke, Yamaguchi-Kabata, Yumi, Nagasaki, Masao
Publicado 2014

Estimating copy numbers of alleles from population-scale high-throughput sequencing data

por Mimori, Takahiro, Nariai, Naoki, Kojima, Kaname, Sato, Yukuto, Kawai, Yosuke, Yamaguchi-Kabata, Yumi, Nagasaki, Masao
Publicado 2015

iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data

por Mimori, Takahiro, Nariai, Naoki, Kojima, Kaname, Takahashi, Mamoru, Ono, Akira, Sato, Yukuto, Yamaguchi-Kabata, Yumi, Nagasaki, Masao
Publicado 2013

SUGAR: graphical user interface-based data refiner for high-throughput DNA sequencing

por Sato, Yukuto, Kojima, Kaname, Nariai, Naoki, Yamaguchi-Kabata, Yumi, Kawai, Yosuke, Takahashi, Mamoru, Mimori, Takahiro, Nagasaki, Masao
Publicado 2014

Japonica array: improved genotype imputation by designing a population-specific SNP array with 1070 Japanese individuals

por Kawai, Yosuke, Mimori, Takahiro, Kojima, Kaname, Nariai, Naoki, Danjoh, Inaho, Saito, Rumiko, Yasuda, Jun, Yamamoto, Masayuki, Nagasaki, Masao
Publicado 2015

HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data

por Nariai, Naoki, Kojima, Kaname, Saito, Sakae, Mimori, Takahiro, Sato, Yukuto, Kawai, Yosuke, Yamaguchi-Kabata, Yumi, Yasuda, Jun, Nagasaki, Masao
Publicado 2015

Identification of the functional variant driving ORMDL3 and GSDMB expression in human chromosome 17q12-21 in primary biliary cholangitis

por Hitomi, Yuki, Kojima, Kaname, Kawashima, Minae, Kawai, Yosuke, Nishida, Nao, Aiba, Yoshihiro, Yasunami, Michio, Nagasaki, Masao, Nakamura, Minoru, Tokunaga, Katsushi
Publicado 2017

NFKB1 and MANBA Confer Disease Susceptibility to Primary Biliary Cholangitis via Independent Putative Primary Functional Variants

por Hitomi, Yuki, Nakatani, Ken, Kojima, Kaname, Nishida, Nao, Kawai, Yosuke, Kawashima, Minae, Aiba, Yoshihiro, Nagasaki, Masao, Nakamura, Minoru, Tokunaga, Katsushi
Publicado 2018