GOsummaries: an R Package for Visual Functional Annotation of Experimental Data

por Kolde, Raivo, Vilo, Jaak
Publicado 2015

Robust rank aggregation for gene list integration and meta-analysis

por Kolde, Raivo, Laur, Sven, Adler, Priit, Vilo, Jaak
Publicado 2012

seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data

por Kolde, Raivo, Märtens, Kaspar, Lokk, Kaie, Laur, Sven, Vilo, Jaak
Publicado 2016

Gene Expression-Based Approaches in Differentiation of Metastases and Second Primary Tumour

por Vooder, Tõnu, Välk, Kristjan, Kolde, Raivo, Roosipuu, Retlav, Vilo, Jaak, Metspalu, Andres
Publicado 2010

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods

por Adler, Priit, Kolde, Raivo, Kull, Meelis, Tkachenko, Aleksandr, Peterson, Hedi, Reimand, Jüri, Vilo, Jaak
Publicado 2009

Genome-wide promoter analysis of histone modifications in human monocyte-derived antigen presenting cells

por Tserel, Liina, Kolde, Raivo, Rebane, Ana, Kisand, Kai, Org, Tõnis, Peterson, Hedi, Vilo, Jaak, Peterson, Pärt
Publicado 2010

Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data

por Chen, Yun, Jørgensen, Mette, Kolde, Raivo, Zhao, Xiaobei, Parker, Brian, Valen, Eivind, Wen, Jiayu, Sandelin, Albin
Publicado 2011

Estimating differential expression from multiple indicators

por Ilmjärv, Sten, Hundahl, Christian Ansgar, Reimets, Riin, Niitsoo, Margus, Kolde, Raivo, Vilo, Jaak, Vasar, Eero, Luuk, Hendrik
Publicado 2014

Trajectories: a framework for detecting temporal clinical event sequences from health data standardized to the Observational Medical Outcomes Partnership (OMOP) Common Data Model

por Künnapuu, Kadri, Ioannou, Solomon, Ligi, Kadri, Kolde, Raivo, Laur, Sven, Vilo, Jaak, Rijnbeek, Peter R, Reisberg, Sulev
Publicado 2022

A retrospective cohort study of incidence and risk factors for severe SARS-CoV-2 breakthrough infection among fully vaccinated people

por Meister, Tatjana, Kolde, Anastassia, Fischer, Krista, Pisarev, Heti, Kolde, Raivo, Kalda, Ruth, Suija, Kadri, Tisler, Anna, Uusküla, Anneli
Publicado 2023

Post-acute sequelae of COVID-19 among hospitalized patients in Estonia: Nationwide matched cohort study

por Tisler, Anna, Stirrup, Oliver, Pisarev, Heti, Kalda, Ruth, Meister, Tatjana, Suija, Kadri, Kolde, Raivo, Piirsoo, Marko, Uusküla, Anneli
Publicado 2022

2441. Automated, Rapid Detection of Potential Healthcare-Acquired Infection Clusters Based on Microbiology And Patient Geotemporal Data

por Kolde, Raivo, Loving, Joshua, Sharma, Rohit, Carmona, Juan J, Doty, Alan J, Gross, Brian D, van Aggelen, Helen C
Publicado 2019

Clinical characteristics and risk factors for COVID-19 infection and disease severity: A nationwide observational study in Estonia

por Meister, Tatjana, Pisarev, Heti, Kolde, Raivo, Kalda, Ruth, Suija, Kadri, Milani, Lili, Karo-Astover, Liis, Piirsoo, Marko, Uusküla, Anneli
Publicado 2022

Risk of SARS-CoV-2 infection and hospitalization in individuals with natural, vaccine-induced and hybrid immunity: a retrospective population-based cohort study from Estonia

por Uusküla, Anneli, Pisarev, Heti, Tisler, Anna, Meister, Tatjana, Suija, Kadri, Huik, Kristi, Abroi, Aare, Kalda, Ruth, Kolde, Raivo, Fischer, Krista
Publicado 2023

Long-term mortality following SARS-CoV-2 infection: A national cohort study from Estonia

por Uusküla, Anneli, Jürgenson, Tuuli, Pisarev, Heti, Kolde, Raivo, Meister, Tatjana, Tisler, Anna, Suija, Kadri, Kalda, Ruth, Piirsoo, Marko, Fischer, Krista
Publicado 2022

Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin

por Ma, Siyuan, Shungin, Dmitry, Mallick, Himel, Schirmer, Melanie, Nguyen, Long H., Kolde, Raivo, Franzosa, Eric, Vlamakis, Hera, Xavier, Ramnik, Huttenhower, Curtis
Publicado 2022

Age-related profiling of DNA methylation in CD8+ T cells reveals changes in immune response and transcriptional regulator genes

por Tserel, Liina, Kolde, Raivo, Limbach, Maia, Tretyakov, Konstantin, Kasela, Silva, Kisand, Kai, Saare, Mario, Vilo, Jaak, Metspalu, Andres, Milani, Lili, Peterson, Pärt
Publicado 2015

Host genetic variation and its microbiome interactions within the Human Microbiome Project

por Kolde, Raivo, Franzosa, Eric A., Rahnavard, Gholamali, Hall, Andrew Brantley, Vlamakis, Hera, Stevens, Christine, Daly, Mark J., Xavier, Ramnik J., Huttenhower, Curtis
Publicado 2018

Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development

por Billon, Nathalie, Kolde, Raivo, Reimand, Jüri, Monteiro, Miguel C, Kull, Meelis, Peterson, Hedi, Tretyakov, Konstantin, Adler, Priit, Wdziekonski, Brigitte, Vilo, Jaak, Dani, Christian
Publicado 2010

DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

por Lokk, Kaie, Modhukur, Vijayachitra, Rajashekar, Balaji, Märtens, Kaspar, Mägi, Reedik, Kolde, Raivo, Koltšina, Marina, Nilsson, Torbjörn K, Vilo, Jaak, Salumets, Andres, Tõnisson, Neeme
Publicado 2014