Numerous Trigger-like Interactions of Kinases/Protein Phosphatases in Human Skeletal Muscles Can Underlie Transient Processes in Activation of Signaling Pathways during Exercise

por Vertyshev, Alexander Yu., Akberdin, Ilya R., Kolpakov, Fedor A.
Publicado 2023

Transcriptomic Signatures and Upstream Regulation in Human Skeletal Muscle Adapted to Disuse and Aerobic Exercise

por Makhnovskii, Pavel A., Bokov, Roman O., Kolpakov, Fedor A., Popov, Daniil V.
Publicado 2021

Assessment of transcriptional importance of cell line-specific features based on GTRD and FANTOM5 data

por Sharipov, Ruslan N., Kondrakhin, Yury V., Ryabova, Anna S., Yevshin, Ivan S., Kolpakov, Fedor A.
Publicado 2020

Population size estimation for quality control of ChIP-Seq datasets

por Kolmykov, Semyon K., Kondrakhin, Yury V., Yevshin, Ivan S., Sharipov, Ruslan N., Ryabova, Anna S., Kolpakov, Fedor A.
Publicado 2019

Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data

por Vorontsov, Ilya E., Fedorova, Alla D., Yevshin, Ivan S., Sharipov, Ruslan N., Kolpakov, Fedor A., Makeev, Vsevolod J., Kulakovskiy, Ivan V.
Publicado 2018

A Modular Mathematical Model of Exercise-Induced Changes in Metabolism, Signaling, and Gene Expression in Human Skeletal Muscle

por Akberdin, Ilya R., Kiselev, Ilya N., Pintus, Sergey S., Sharipov, Ruslan N., Vertyshev, Alexander Yu, Vinogradova, Olga L., Popov, Daniil V., Kolpakov, Fedor A.
Publicado 2021

Physiologically Based Pharmacokinetic Modeling of Nanoparticle Biodistribution: A Review of Existing Models, Simulation Software, and Data Analysis Tools

por Kutumova, Elena O., Akberdin, Ilya R., Kiselev, Ilya N., Sharipov, Ruslan N., Egorova, Vera S., Syrocheva, Anastasiia O., Parodi, Alessandro, Zamyatnin, Andrey A., Kolpakov, Fedor A.
Publicado 2022

Alternative transcription start sites contribute to acute-stress-induced transcriptome response in human skeletal muscle

por Makhnovskii, Pavel A., Gusev, Oleg A., Bokov, Roman O., Gazizova, Guzel R., Vepkhvadze, Tatiana F., Lysenko, Evgeny A., Vinogradova, Olga L., Kolpakov, Fedor A., Popov, Daniil V.
Publicado 2022

Genome-Wide Atlas of Promoter Expression Reveals Contribution of Transcribed Regulatory Elements to Genetic Control of Disuse-Mediated Atrophy of Skeletal Muscle

por Pintus, Sergey S., Akberdin, Ilya R., Yevshin, Ivan, Makhnovskii, Pavel, Tyapkina, Oksana, Nigmetzyanov, Islam, Nurullin, Leniz, Devyatiyarov, Ruslan, Shagimardanova, Elena, Popov, Daniil, Kolpakov, Fedor A., Gusev, Oleg, Gazizova, Guzel R.
Publicado 2021

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models

por Kulakovskiy, Ivan V., Vorontsov, Ilya E., Yevshin, Ivan S., Soboleva, Anastasiia V., Kasianov, Artem S., Ashoor, Haitham, Ba-alawi, Wail, Bajic, Vladimir B., Medvedeva, Yulia A., Kolpakov, Fedor A., Makeev, Vsevolod J.
Publicado 2016

Regulation of Proteins in Human Skeletal Muscle: The Role of Transcription

por Makhnovskii, Pavel A., Zgoda, Victor G., Bokov, Roman O., Shagimardanova, Elena I., Gazizova, Guzel R., Gusev, Oleg A., Lysenko, Evgeny A., Kolpakov, Fedor A., Vinogradova, Olga L., Popov, Daniil V.
Publicado 2020

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

por Kulakovskiy, Ivan V, Vorontsov, Ilya E, Yevshin, Ivan S, Sharipov, Ruslan N, Fedorova, Alla D, Rumynskiy, Eugene I, Medvedeva, Yulia A, Magana-Mora, Arturo, Bajic, Vladimir B, Papatsenko, Dmitry A, Kolpakov, Fedor A, Makeev, Vsevolod J
Publicado 2018