Globaltest and GOEAST: two different approaches for Gene Ontology analysis

por Hulsegge, Ina, Kommadath, Arun, Smits, Mari A
Publicado 2009

The gut microbiome and resistome of conventionally vs. pasture-raised pigs

por Holman, Devin B., Gzyl, Katherine E., Kommadath, Arun
Publicado 2023

Novel Insights into the Pig Gut Microbiome Using Metagenome-Assembled Genomes

por Holman, Devin B., Kommadath, Arun, Tingley, Jeffrey P., Abbott, D. Wade
Publicado 2022

Development of a Novel Mule Deer Genomic Assembly and Species-Diagnostic SNP Panel for Assessing Introgression in Mule Deer, White-Tailed Deer, and Their Interspecific Hybrids

por Russell, Ty, Cullingham, Catherine, Kommadath, Arun, Stothard, Paul, Herbst, Allen, Coltman, David
Publicado 2019

MicroRNA Buffering and Altered Variance of Gene Expression in Response to Salmonella Infection

por Bao, Hua, Kommadath, Arun, Plastow, Graham S., Tuggle, Christopher K., Guan, Le Luo, Stothard, Paul
Publicado 2014

Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species

por Bao, Hua, Kommadath, Arun, Sun, Xu, Meng, Yan, Arantes, Adriano S, Plastow, Graham S, Guan, Le Luo, Stothard, Paul
Publicado 2013

Regional Regulation of Transcription in the Bovine Genome

por Kommadath, Arun, Nie, Haisheng, Groenen, Martien A. M., te Pas, Marinus F. W., Veerkamp, Roel F., Smits, Mari A.
Publicado 2011

Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding

por Kommadath, Arun, Bao, Hua, Arantes, Adriano S, Plastow, Graham S, Tuggle, Christopher K, Bearson, Shawn MD, Luo Guan, Le, Stothard, Paul
Publicado 2014

Differences in Whole Blood Gene Expression Associated with Infection Time-Course and Extent of Fetal Mortality in a Reproductive Model of Type 2 Porcine Reproductive and Respirator...

por Wilkinson, Jamie M., Ladinig, Andrea, Bao, Hua, Kommadath, Arun, Stothard, Paul, Lunney, Joan K., Harding, John C. S., Plastow, Graham S.
Publicado 2016

Evaluation of RNA quality and functional transcriptome of beef longissimus thoracis over time post-mortem

por Lam, Stephanie, Kommadath, Arun, López-Campos, Óscar, Prieto, Nuria, Aalhus, Jennifer, Juárez, Manuel, Dugan, Michael E. R., Vahmani, Payam
Publicado 2021

Neural transcriptomic signature of chronic wasting disease in white-tailed deer

por O’Hara, Eóin, Herbst, Allen, Kommadath, Arun, Aiken, Judd M., McKenzie, Debbie, Goodarzi, Negin, Skinner, Pamela, Stothard, Paul
Publicado 2022

Mining for single nucleotide polymorphisms in pig genome sequence data

por Kerstens, Hindrik HD, Kollers, Sonja, Kommadath, Arun, del Rosario, Marisol, Dibbits, Bert, Kinders, Sylvia M, Crooijmans, Richard P, Groenen, Martien AM
Publicado 2009

A large interactive visual database of copy number variants discovered in taurine cattle

por Kommadath, Arun, Grant, Jason R, Krivushin, Kirill, Butty, Adrien M, Baes, Christine F, Carthy, Tara R, Berry, Donagh P, Stothard, Paul
Publicado 2019

Gene expression patterns in four brain areas associate with quantitative measure of estrous behavior in dairy cows

por Kommadath, Arun, Woelders, Henri, Beerda, Bonne, Mulder, Herman A, de Wit, Agnes AC, Veerkamp, Roel F, te Pas, Marinus FW, Smits, Mari A
Publicado 2011

Genome-wide whole blood microRNAome and transcriptome analyses reveal miRNA-mRNA regulated host response to foodborne pathogen Salmonella infection in swine

por Bao, Hua, Kommadath, Arun, Liang, Guanxiang, Sun, Xu, Arantes, Adriano S., Tuggle, Christopher K., Bearson, Shawn M.D., Plastow, Graham S., Stothard, Paul, Guan, Le Luo
Publicado 2015

High confidence copy number variants identified in Holstein dairy cattle from whole genome sequence and genotype array data

por Butty, Adrien M., Chud, Tatiane C. S., Miglior, Filippo, Schenkel, Flavio S., Kommadath, Arun, Krivushin, Kirill, Grant, Jason R., Häfliger, Irene M., Drögemüller, Cord, Cánovas, Angela, Stothard, Paul, Baes, Christine F.
Publicado 2020

Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples

por Choi, Igseo, Bao, Hua, Kommadath, Arun, Hosseini, Afshin, Sun, Xu, Meng, Yan, Stothard, Paul, Plastow, Graham S, Tuggle, Christopher K, Reecy, James M, Fritz-Waters, Eric, Abrams, Samuel M, Lunney, Joan K, Guan, Le Luo
Publicado 2014

Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a...

por Schroyen, Martine, Eisley, Christopher, Koltes, James E., Fritz-Waters, Eric, Choi, Igseo, Plastow, Graham S., Guan, Leluo, Stothard, Paul, Bao, Hua, Kommadath, Arun, Reecy, James M., Lunney, Joan K., Rowland, Robert R. R., Dekkers, Jack C. M., Tuggle, Christopher K.
Publicado 2016

Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection

por Kommadath, Arun, Bao, Hua, Choi, Igseo, Reecy, James M., Koltes, James E., Fritz-Waters, Elyn, Eisley, Chris J., Grant, Jason R., Rowland, Robert R. R., Tuggle, Christopher K., Dekkers, Jack C. M., Lunney, Joan K., Guan, Le Luo, Stothard, Paul, Plastow, Graham S.
Publicado 2017

Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection

por Koltes, James E., Fritz-Waters, Eric, Eisley, Chris J., Choi, Igseo, Bao, Hua, Kommadath, Arun, Serão, Nick V. L., Boddicker, Nicholas J., Abrams, Sam M., Schroyen, Martine, Loyd, Hyelee, Tuggle, Chris K., Plastow, Graham S., Guan, Leluo, Stothard, Paul, Lunney, Joan K., Liu, Peng, Carpenter, Susan, Rowland, Robert R. R., Dekkers, Jack C. M., Reecy, James M.
Publicado 2015