Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions

por Sugimoto, Yoichiro, König, Julian, Hussain, Shobbir, Zupan, Blaž, Curk, Tomaž, Frye, Michaela, Ule, Jernej
Publicado 2012

Intergenic Alu exonisation facilitates the evolution of tissue-specific transcript ends

por Tajnik, Mojca, Vigilante, Alessandra, Braun, Simon, Hänel, Heike, Luscombe, Nicholas M., Ule, Jernej, Zarnack, Kathi, König, Julian
Publicado 2015

Interaction profiling of RNA-binding ubiquitin ligases reveals a link between posttranscriptional regulation and the ubiquitin system

por Hildebrandt, Andrea, Alanis-Lobato, Gregorio, Voigt, Andrea, Zarnack, Kathi, Andrade-Navarro, Miguel A., Beli, Petra, König, Julian
Publicado 2017

Requirement of Heterogeneous Nuclear Ribonucleoprotein C for BRCA Gene Expression and Homologous Recombination

por Anantha, Rachel W., Alcivar, Allen L., Ma, Jianglin, Cai, Hong, Simhadri, Srilatha, Ule, Jernej, König, Julian, Xia, Bing
Publicado 2013

Risk-Stratified Cardiovascular Screening Including Angiographic and Procedural Outcomes of Percutaneous Coronary Interventions in Renal Transplant Candidates

por König, Julian, Möckel, Martin, Mueller, Eda, Bocksch, Wolfgang, Baid-Agrawal, Seema, Babel, Nina, Schindler, Ralf, Reinke, Petra, Nickel, Peter
Publicado 2014

Splicing repression allows the gradual emergence of new Alu-exons in primate evolution

por Attig, Jan, Ruiz de los Mozos, Igor, Haberman, Nejc, Wang, Zhen, Emmett, Warren, Zarnack, Kathi, König, Julian, Ule, Jernej
Publicado 2016

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

por König, Julian, Zarnack, Kathi, Rot, Gregor, Curk, Tomaž, Kayikci, Melis, Zupan, Blaž, Turner, Daniel J., Luscombe, Nicholas M., Ule, Jernej
Publicado 2010

iCLIP - Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution

por Konig, Julian, Zarnack, Kathi, Rot, Gregor, Curk, Tomaz, Kayikci, Melis, Zupan, Blaz, Turner, Daniel J., Luscombe, Nicholas M., Ule, Jernej
Publicado 2011

Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB

por Coelho, Miguel B, Attig, Jan, Bellora, Nicolás, König, Julian, Hallegger, Martina, Kayikci, Melis, Eyras, Eduardo, Ule, Jernej, Smith, Christopher WJ
Publicado 2015

Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements

por Zarnack, Kathi, König, Julian, Tajnik, Mojca, Martincorena, Iñigo, Eustermann, Sebastian, Stévant, Isabelle, Reyes, Alejandro, Anders, Simon, Luscombe, Nicholas M., Ule, Jernej
Publicado 2013

iCLIP: Protein–RNA interactions at nucleotide resolution

por Huppertz, Ina, Attig, Jan, D’Ambrogio, Andrea, Easton, Laura E., Sibley, Christopher R., Sugimoto, Yoichiro, Tajnik, Mojca, König, Julian, Ule, Jernej
Publicado 2014

A rapid protocol for ribosome profiling of low input samples

por Meindl, Andreas, Romberger, Markus, Lehmann, Gerhard, Eichner, Norbert, Kleemann, Leon, Wu, Jie, Danner, Johannes, Boesl, Maria, Mesitov, Mikhail, Meister, Gunter, König, Julian, Leidel, Sebastian Andreas, Medenbach, Jan
Publicado 2023

Makorin 1 controls embryonic patterning by alleviating Bruno1-mediated repression of oskar translation

por Dold, Annabelle, Han, Hong, Liu, Niankun, Hildebrandt, Andrea, Brüggemann, Mirko, Rücklé, Cornelia, Hänel, Heike, Busch, Anke, Beli, Petra, Zarnack, Kathi, König, Julian, Roignant, Jean-Yves, Lasko, Paul
Publicado 2020

Direct long-read RNA sequencing identifies a subset of questionable exitrons likely arising from reverse transcription artifacts

por Schulz, Laura, Torres-Diz, Manuel, Cortés-López, Mariela, Hayer, Katharina E., Asnani, Mukta, Tasian, Sarah K., Barash, Yoseph, Sotillo, Elena, Zarnack, Kathi, König, Julian, Thomas-Tikhonenko, Andrei
Publicado 2021

NOseq: amplicon sequencing evaluation method for RNA m(6)A sites after chemical deamination

por Werner, Stephan, Galliot, Aurellia, Pichot, Florian, Kemmer, Thomas, Marchand, Virginie, Sednev, Maksim V, Lence, Tina, Roignant, Jean-Yves, König, Julian, Höbartner, Claudia, Motorin, Yuri, Hildebrandt, Andreas, Helm, Mark
Publicado 2020

Insights into the design and interpretation of iCLIP experiments

por Haberman, Nejc, Huppertz, Ina, Attig, Jan, König, Julian, Wang, Zhen, Hauer, Christian, Hentze, Matthias W., Kulozik, Andreas E., Le Hir, Hervé, Curk, Tomaž, Sibley, Christopher R., Zarnack, Kathi, Ule, Jernej
Publicado 2017

Erratum to: Insights into the design and interpretation of iCLIP experiments

por Haberman, Nejc, Huppertz, Ina, Attig, Jan, König, Julian, Wang, Zhen, Hauer, Christian, Hentze, Matthias W., Kulozik, Andreas E., Le Hir, Hervé, Curk, Tomaž, Sibley, Christopher R., Zarnack, Kathi, Ule, Jernej
Publicado 2017

The RNA-binding profile of the splicing factor SRSF6 in immortalized human pancreatic β-cells

por Alvelos, Maria Inês, Brüggemann, Mirko, Sutandy, FX Reymond, Juan-Mateu, Jonàs, Colli, Maikel Luis, Busch, Anke, Lopes, Miguel, Castela, Ângela, Aartsma-Rus, Annemieke, König, Julian, Zarnack, Kathi, Eizirik, Décio L
Publicado 2020

In vitro iCLIP-based modeling uncovers how the splicing factor U2AF2 relies on regulation by cofactors

por Sutandy, F.X. Reymond, Ebersberger, Stefanie, Huang, Lu, Busch, Anke, Bach, Maximilian, Kang, Hyun-Seo, Fallmann, Jörg, Maticzka, Daniel, Backofen, Rolf, Stadler, Peter F., Zarnack, Kathi, Sattler, Michael, Legewie, Stefan, König, Julian
Publicado 2018

Analysis of RBP expression and binding sites identifies PTBP1 as a regulator of CD19 expression in B-ALL

por Ziegler, Nicole, Cortés-López, Mariela, Alt, Francesca, Sprang, Maximilian, Ustjanzew, Arsenij, Lehmann, Nadine, El Malki, Khalifa, Wingerter, Arthur, Russo, Alexandra, Beck, Olaf, Attig, Sebastian, Roth, Lea, König, Julian, Paret, Claudia, Faber, Jörg
Publicado 2023