Alu pair exclusions in the human genome

por Cook, George W, Konkel, Miriam K, Major, James D, Walker, Jerilyn A, Han, Kyudong, Batzer, Mark A
Publicado 2011

Tangram: a comprehensive toolbox for mobile element insertion detection

por Wu, Jiantao, Lee, Wan-Ping, Ward, Alistair, Walker, Jerilyn A, Konkel, Miriam K, Batzer, Mark A, Marth, Gabor T
Publicado 2014

Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers

por Walker, Jerilyn A, Konkel, Miriam K, Ullmer, Brygg, Monceaux, Christopher P, Ryder, Oliver A, Hubley, Robert, Smit, Arian FA, Batzer, Mark A
Publicado 2012

Discovery of a new repeat family in the Callithrix jacchus genome

por Konkel, Miriam K., Ullmer, Brygg, Arceneaux, Erika L., Sanampudi, Sreeja, Brantley, Sarah A., Hubley, Robert, Smit, Arian F.A., Batzer, Mark A.
Publicado 2016

A Comparison of 100 Human Genes Using an Alu Element-Based Instability Model

por Cook, George W., Konkel, Miriam K., Walker, Jerilyn A., Bourgeois, Matthew G., Fullerton, Mitchell L., Fussell, John T., Herbold, Heath D., Batzer, Mark A.
Publicado 2013

Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project

por Konkel, Miriam K., Walker, Jerilyn A., Hotard, Ashley B., Ranck, Megan C., Fontenot, Catherine C., Storer, Jessica, Stewart, Chip, Marth, Gabor T., Batzer, Mark A.
Publicado 2015

Evolution of Alu Subfamily Structure in the Saimiri Lineage of New World Monkeys

por Baker, Jasmine N., Walker, Jerilyn A., Vanchiere, John A., Phillippe, Kacie R., St. Romain, Corey P., Gonzalez-Quiroga, Paulina, Denham, Michael W., Mierl, Jackson R., Konkel, Miriam K., Batzer, Mark A.
Publicado 2017

Centromere Remodeling in Hoolock leuconedys (Hylobatidae) by a New Transposable Element Unique to the Gibbons

por Carbone, Lucia, Harris, R. Alan, Mootnick, Alan R., Milosavljevic, Aleksandar, Martin, David I. K., Rocchi, Mariano, Capozzi, Oronzo, Archidiacono, Nicoletta, Konkel, Miriam K., Walker, Jerilyn A., Batzer, Mark A., de Jong, Pieter J.
Publicado 2012

Papio Baboon Species Indicative Alu Elements

por Walker, Jerilyn A., Jordan, Vallmer E., Steely, Cody J., Beckstrom, Thomas O., McDaniel, Cullen L., St. Romain, Corey P., Bennett, Emily C., Robichaux, Arianna, Clement, Brooke N., Konkel, Miriam K., Batzer, Mark A.
Publicado 2017

A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms

por Jordan, Vallmer E., Walker, Jerilyn A., Beckstrom, Thomas O., Steely, Cody J., McDaniel, Cullen L., St. Romain, Corey P., Worley, Kim C., Phillips-Conroy, Jane, Jolly, Clifford J., Rogers, Jeffrey, Konkel, Miriam K., Batzer, Mark A.
Publicado 2018

Alu insertion polymorphisms shared by Papio baboons and Theropithecus gelada reveal an intertwined common ancestry

por Walker, Jerilyn A., Jordan, Vallmer E., Storer, Jessica M., Steely, Cody J., Gonzalez-Quiroga, Paulina, Beckstrom, Thomas O., Rewerts, Lydia C., St. Romain, Corey P., Rockwell, Catherine E., Rogers, Jeffrey, Jolly, Clifford J., Konkel, Miriam K., Batzer, Mark A.
Publicado 2019

Amplification Dynamics of Platy-1 Retrotransposons in the Cebidae Platyrrhine Lineage

por Storer, Jessica M, Mierl, Jackson R, Brantley, Sarah A, Threeton, Breanna, Sukharutski, Yahor, Rewerts, Lydia C, St. Romain, Corey P, Foreman, Madeline M, Baker, Jasmine N, Walker, Jerilyn A, Orkin, Joseph D, Melin, Amanda D, Phillips, Kimberley A, Konkel, Miriam K, Batzer, Mark A
Publicado 2019

Alu Insertion Polymorphisms as Evidence for Population Structure in Baboons

por Steely, Cody J., Walker, Jerilyn A., Jordan, Vallmer E., Beckstrom, Thomas O., McDaniel, Cullen L., St. Romain, Corey P., Bennett, Emily C., Robichaux, Arianna, Clement, Brooke N., Raveendran, Muthuswamy, Worley, Kim C., Phillips-Conroy, Jane, Jolly, Clifford J., Rogers, Jeff, Konkel, Miriam K., Batzer, Mark A.
Publicado 2017

A Comprehensive Map of Mobile Element Insertion Polymorphisms in Humans

por Stewart, Chip, Kural, Deniz, Strömberg, Michael P., Walker, Jerilyn A., Konkel, Miriam K., Stütz, Adrian M., Urban, Alexander E., Grubert, Fabian, Lam, Hugo Y. K., Lee, Wan-Ping, Busby, Michele, Indap, Amit R., Garrison, Erik, Huff, Chad, Xing, Jinchuan, Snyder, Michael P., Jorde, Lynn B., Batzer, Mark A., Korbel, Jan O., Marth, Gabor T.
Publicado 2011

The comparative genomics and complex population history of Papio baboons

por Rogers, Jeffrey, Raveendran, Muthuswamy, Harris, R. Alan, Mailund, Thomas, Leppälä, Kalle, Athanasiadis, Georgios, Schierup, Mikkel Heide, Cheng, Jade, Munch, Kasper, Walker, Jerilyn A., Konkel, Miriam K., Jordan, Vallmer, Steely, Cody J., Beckstrom, Thomas O., Bergey, Christina, Burrell, Andrew, Schrempf, Dominik, Noll, Angela, Kothe, Maximillian, Kopp, Gisela H., Liu, Yue, Murali, Shwetha, Billis, Konstantinos, Martin, Fergal J., Muffato, Matthieu, Cox, Laura, Else, James, Disotell, Todd, Muzny, Donna M., Phillips-Conroy, Jane, Aken, Bronwen, Eichler, Evan E., Marques-Bonet, Tomas, Kosiol, Carolin, Batzer, Mark A., Hahn, Matthew W., Tung, Jenny, Zinner, Dietmar, Roos, Christian, Jolly, Clifford J., Gibbs, Richard A., Worley, Kim C.
Publicado 2019

Mapping copy number variation by population scale genome sequencing

por Mills, Ryan E., Walter, Klaudia, Stewart, Chip, Handsaker, Robert E., Chen, Ken, Alkan, Can, Abyzov, Alexej, Yoon, Seungtai Chris, Ye, Kai, Cheetham, R. Keira, Chinwalla, Asif, Conrad, Donald F., Fu, Yutao, Grubert, Fabian, Hajirasouliha, Iman, Hormozdiari, Fereydoun, Iakoucheva, Lilia M., Iqbal, Zamin, Kang, Shuli, Kidd, Jeffrey M., Konkel, Miriam K., Korn, Joshua, Khurana, Ekta, Kura, Deniz, Lam, Hugo Y. K., Leng, Jing, Li, Ruiqiang, Li, Yingrui, Lin, Chang-Yun, Luo, Ruibang, Mu, Xinmeng Jasmine, Nemesh, James, Peckham, Heather E., Rausch, Tobias, Scally, Aylwyn, Shi, Xinghua, Stromberg, Michael P., Stütz, Adrian M., Urban, Alexander Eckehart, Walker, Jerilyn A., Wu, Jiantao, Zhang, Yujun, Zhang, Zhengdong D., Batzer, Mark A., Ding, Li, Marth, Gobor T., McVean, Gil, Sebat, Jonathan, Snyder, Michael, Wang, Jun, Ye, Kenny, Eichler, Evan E., Gerstein, Mark B., Hurles, Matthew E., Lee, Charles, McCarroll, Steven A., Korbel, Jan O.
Publicado 2011

An integrated map of structural variation in 2,504 human genomes

por Sudmant, Peter H., Rausch, Tobias, Gardner, Eugene J., Handsaker, Robert E., Abyzov, Alexej, Huddleston, John, Zhang, Yan, Ye, Kai, Jun, Goo, Hsi-Yang Fritz, Markus, Konkel, Miriam K., Malhotra, Ankit, Stütz, Adrian M., Shi, Xinghua, Paolo Casale, Francesco, Chen, Jieming, Hormozdiari, Fereydoun, Dayama, Gargi, Chen, Ken, Malig, Maika, Chaisson, Mark J. P., Walter, Klaudia, Meiers, Sascha, Kashin, Seva, Garrison, Erik, Auton, Adam, Lam, Hugo Y. K., Jasmine Mu, Xinmeng, Alkan, Can, Antaki, Danny, Bae, Taejeong, Cerveira, Eliza, Chines, Peter, Chong, Zechen, Clarke, Laura, Dal, Elif, Ding, Li, Emery, Sarah, Fan, Xian, Gujral, Madhusudan, Kahveci, Fatma, Kidd, Jeffrey M., Kong, Yu, Lameijer, Eric-Wubbo, McCarthy, Shane, Flicek, Paul, Gibbs, Richard A., Marth, Gabor, Mason, Christopher E., Menelaou, Androniki, Muzny, Donna M., Nelson, Bradley J., Noor, Amina, Parrish, Nicholas F., Pendleton, Matthew, Quitadamo, Andrew, Raeder, Benjamin, Schadt, Eric E., Romanovitch, Mallory, Schlattl, Andreas, Sebra, Robert, Shabalin, Andrey A., Untergasser, Andreas, Walker, Jerilyn A., Wang, Min, Yu, Fuli, Zhang, Chengsheng, Zhang, Jing, Zheng-Bradley, Xiangqun, Zhou, Wanding, Zichner, Thomas, Sebat, Jonathan, Batzer, Mark A., McCarroll, Steven A., Mills, Ryan E., Gerstein, Mark B., Bashir, Ali, Stegle, Oliver, Devine, Scott E., Lee, Charles, Eichler, Evan E., Korbel, Jan O.
Publicado 2015

Comparative and demographic analysis of orang-utan genomes

por Locke, Devin P., Hillier, LaDeana W., Warren, Wesley C., Worley, Kim C., Nazareth, Lynne V., Muzny, Donna M., Yang, Shiaw-Pyng, Wang, Zhengyuan, Chinwalla, Asif T., Minx, Pat, Mitreva, Makedonka, Cook, Lisa, Delehaunty, Kim D., Fronick, Catrina, Schmidt, Heather, Fulton, Lucinda A., Fulton, Robert S., Nelson, Joanne O., Magrini, Vincent, Pohl, Craig, Graves, Tina A., Markovic, Chris, Cree, Andy, Dinh, Huyen H., Hume, Jennifer, Kovar, Christie L., Fowler, Gerald R., Lunter, Gerton, Meader, Stephen, Heger, Andreas, Ponting, Chris P., Marques-Bonet, Tomas, Alkan, Can, Chen, Lin, Cheng, Ze, Kidd, Jeffrey M., Eichler, Evan E., White, Simon, Searle, Stephen, Vilella, Albert J., Chen, Yuan, Flicek, Paul, Ma, Jian, Raney, Brian, Suh, Bernard, Burhans, Richard, Herrero, Javier, Haussler, David, Faria, Rui, Fernando, Olga, Darré, Fleur, Farré, Domènec, Gazave, Elodie, Oliva, Meritxell, Navarro, Arcadi, Roberto, Roberta, Capozzi, Oronzo, Archidiacono, Nicoletta, Valle, Giuliano Della, Purgato, Stefania, Rocchi, Mariano, Konkel, Miriam K., Walker, Jerilyn A., Ullmer, Brygg, Batzer, Mark A., Smit, Arian F. A., Hubley, Robert, Casola, Claudio, Schrider, Daniel R., Hahn, Matthew W., Quesada, Victor, Puente, Xose S., Ordoñez, Gonzalo R., López-Otín, Carlos, Vinar, Tomas, Brejova, Brona, Ratan, Aakrosh, Harris, Robert S., Miller, Webb, Kosiol, Carolin, Lawson, Heather A., Taliwal, Vikas, Martins, André L., Siepel, Adam, RoyChoudhury, Arindam, Ma, Xin, Degenhardt, Jeremiah, Bustamante, Carlos D., Gutenkunst, Ryan N., Mailund, Thomas, Dutheil, Julien Y., Hobolth, Asger, Schierup, Mikkel H., Ryder, Oliver A., Yoshinaga, Yuko, de Jong, Pieter J., Weinstock, George M., Rogers, Jeffrey, Mardis, Elaine R., Gibbs, Richard A., Wilson, Richard K.
Publicado 2011

Gibbon genome and the fast karyotype evolution of small apes

por Carbone, Lucia, Alan Harris, R., Gnerre, Sante, Veeramah, Krishna R., Lorente-Galdos, Belen, Huddleston, John, Meyer, Thomas J., Herrero, Javier, Roos, Christian, Aken, Bronwen, Anaclerio, Fabio, Archidiacono, Nicoletta, Baker, Carl, Barrell, Daniel, Batzer, Mark A., Beal, Kathryn, Blancher, Antoine, Bohrson, Craig L., Brameier, Markus, Campbell, Michael S., Capozzi, Oronzo, Casola, Claudio, Chiatante, Giorgia, Cree, Andrew, Damert, Annette, de Jong, Pieter J., Dumas, Laura, Fernandez-Callejo, Marcos, Flicek, Paul, Fuchs, Nina V., Gut, Ivo, Gut, Marta, Hahn, Matthew W., Hernandez-Rodriguez, Jessica, Hillier, LaDeana W., Hubley, Robert, Ianc, Bianca, Izsvák, Zsuzsanna, Jablonski, Nina G., Johnstone, Laurel M., Karimpour-Fard, Anis, Konkel, Miriam K., Kostka, Dennis, Lazar, Nathan H., Lee, Sandra L., Lewis, Lora R., Liu, Yue, Locke, Devin P., Mallick, Swapan, Mendez, Fernando L., Muffato, Matthieu, Nazareth, Lynne V., Nevonen, Kimberly A., O’Bleness, Majesta, Ochis, Cornelia, Odom, Duncan T., Pollard, Katherine S., Quilez, Javier, Reich, David, Rocchi, Mariano, Schumann, Gerald G., Searle, Stephen, Sikela, James M., Skollar, Gabriella, Smit, Arian, Sonmez, Kemal, Hallers, Boudewijn ten, Terhune, Elizabeth, Thomas, Gregg W. C., Ullmer, Brygg, Ventura, Mario, Walker, Jerilyn A., Wall, Jeffrey D., Walter, Lutz, Ward, Michelle C., Wheelan, Sarah J., Whelan, Christopher W., White, Simon, Wilhelm, Larry J., Woerner, August E., Yandell, Mark, Zhu, Baoli, Hammer, Michael F., Marques-Bonet, Tomas, Eichler, Evan E., Fulton, Lucinda, Fronick, Catrina, Muzny, Donna M., Warren, Wesley C., Worley, Kim C., Rogers, Jeffrey, Wilson, Richard K., Gibbs, Richard A.
Publicado 2014

Author Correction: Comparative and demographic analysis of orang-utan genomes

por Locke, Devin P., Hillier, LaDeana W., Warren, Wesley C., Worley, Kim C., Nazareth, Lynne V., Muzny, Donna M., Yang, Shiaw-Pyng, Wang, Zhengyuan, Chinwalla, Asif T., Minx, Pat, Mitreva, Makedonka, Cook, Lisa, Delehaunty, Kim D., Fronick, Catrina, Schmidt, Heather, Fulton, Lucinda A., Fulton, Robert S., Nelson, Joanne O., Magrini, Vincent, Pohl, Craig, Graves, Tina A., Markovic, Chris, Cree, Andy, Dinh, Huyen H., Hume, Jennifer, Kovar, Christie L., Fowler, Gerald R., Lunter, Gerton, Meader, Stephen, Heger, Andreas, Ponting, Chris P., Marques-Bonet, Tomas, Alkan, Can, Chen, Lin, Cheng, Ze, Kidd, Jeffrey M., Eichler, Evan E., White, Simon, Searle, Stephen, Vilella, Albert J., Chen, Yuan, Flicek, Paul, Ma, Jian, Raney, Brian, Suh, Bernard, Burhans, Richard, Herrero, Javier, Haussler, David, Faria, Rui, Fernando, Olga, Darré, Fleur, Farré, Domènec, Gazave, Elodie, Oliva, Meritxell, Navarro, Arcadi, Roberto, Roberta, Capozzi, Oronzo, Archidiacono, Nicoletta, Della Valle, Giuliano, Purgato, Stefania, Rocchi, Mariano, Konkel, Miriam K., Walker, Jerilyn A., Ullmer, Brygg, Batzer, Mark A., Smit, Arian F. A., Hubley, Robert, Casola, Claudio, Schrider, Daniel R., Hahn, Matthew W., Quesada, Victor, Puente, Xose S., Ordoñez, Gonzalo R., López-Otín, Carlos, Vinar, Tomas, Brejova, Brona, Ratan, Aakrosh, Harris, Robert S., Miller, Webb, Kosiol, Carolin, Lawson, Heather A., Taliwal, Vikas, Martins, André L., Siepel, Adam, RoyChoudhury, Arindam, Ma, Xin, Degenhardt, Jeremiah, Bustamante, Carlos D., Gutenkunst, Ryan N., Mailund, Thomas, Dutheil, Julien Y., Hobolth, Asger, Schierup, Mikkel H., Ryder, Oliver A., Yoshinaga, Yuko, de Jong, Pieter J., Weinstock, George M., Rogers, Jeffrey, Mardis, Elaine R., Gibbs, Richard A., Wilson, Richard K.
Publicado 2022