The rise and fall of machine learning methods in biomedical research

por Koohy, Hashem
Publicado 2018

A lesson from the ice bucket challenge: using social networks to publicize science

por Koohy, Hashem, Koohy, Behrad
Publicado 2014

In silico identification of vaccine targets for 2019-nCoV

por Lee, Chloe H., Koohy, Hashem
Publicado 2020

Chromatin Accessibility Data Sets Show Bias Due to Sequence Specificity of the DNase I Enzyme

por Koohy, Hashem, Down, Thomas A., Hubbard, Tim J.
Publicado 2013

A Comparison of Peak Callers Used for DNase-Seq Data

por Koohy, Hashem, Down, Thomas A., Spivakov, Mikhail, Hubbard, Tim
Publicado 2014

Can we predict T cell specificity with digital biology and machine learning?

por Hudson, Dan, Fernandes, Ricardo A., Basham, Mark, Ogg, Graham, Koohy, Hashem
Publicado 2023

A systems approach evaluating the impact of SARS-CoV-2 variant of concern mutations on CD8+ T cell responses

por Buckley, Paul R, Lee, Chloe H, Antanaviciute, Agne, Simmons, Alison, Koohy, Hashem
Publicado 2023

Predicting Cross-Reactivity and Antigen Specificity of T Cell Receptors

por Lee, Chloe H., Salio, Mariolina, Napolitani, Giorgio, Ogg, Graham, Simmons, Alison, Koohy, Hashem
Publicado 2020

SARS-CoV-2 peptides bind to NKG2D and increase NK cell activity

por Kim, Hanna, Byun, Jae-Eun, Yoon, Suk Ran, Koohy, Hashem, Jung, Haiyoung, Choi, Inpyo
Publicado 2022

Local Chromatin Features Including PU.1 and IKAROS Binding and H3K4 Methylation Shape the Repertoire of Immunoglobulin Kappa Genes Chosen for V(D)J Recombination

por Matheson, Louise S., Bolland, Daniel J., Chovanec, Peter, Krueger, Felix, Andrews, Simon, Koohy, Hashem, Corcoran, Anne E.
Publicado 2017

Potential CD8+ T Cell Cross-Reactivity Against SARS-CoV-2 Conferred by Other Coronavirus Strains

por Lee, Chloe H., Pinho, Mariana Pereira, Buckley, Paul R., Woodhouse, Isaac B., Ogg, Graham, Simmons, Alison, Napolitani, Giorgio, Koohy, Hashem
Publicado 2020

A robust deep learning workflow to predict CD8 + T-cell epitopes

por Lee, Chloe H., Huh, Jaesung, Buckley, Paul R., Jang, Myeongjun, Pinho, Mariana Pereira, Fernandes, Ricardo A., Antanaviciute, Agne, Simmons, Alison, Koohy, Hashem
Publicado 2023

HLA‐dependent variation in SARS‐CoV‐2 CD8 (+) T cell cross‐reactivity with human coronaviruses

por Buckley, Paul R., Lee, Chloe H., Pereira Pinho, Mariana, Ottakandathil Babu, Rosana, Woo, Jeongmin, Antanaviciute, Agne, Simmons, Alison, Ogg, Graham, Koohy, Hashem
Publicado 2022

A new phosphate-starvation response in fission yeast requires the endocytic function of myosin I

por Petrini, Edoardo, Baillet, Victoire, Cridge, Jake, Hogan, Cassandra J., Guillaume, Cindy, Ke, Huiling, Brandetti, Elisa, Walker, Simon, Koohy, Hashem, Spivakov, Mikhail, Varga-Weisz, Patrick
Publicado 2015

Evaluating performance of existing computational models in predicting CD8+ T cell pathogenic epitopes and cancer neoantigens

por Buckley, Paul R, Lee, Chloe H, Ma, Ruichong, Woodhouse, Isaac, Woo, Jeongmin, Tsvetkov, Vasily O, Shcherbinin, Dmitrii S, Antanaviciute, Agne, Shughay, Mikhail, Rei, Margarida, Simmons, Alison, Koohy, Hashem
Publicado 2022

HLA binding of self-peptides is biased towards proteins with specific molecular functions

por Karnaukhov, Vadim, Paes, Wayne, Woodhouse, Isaac B., Partridge, Thomas, Nicastri, Annalisa, Brackenridge, Simon, Scherbinin, Dmitrii, Chudakov, Dmitry M., Zvyagin, Ivan V., Ternette, Nicola, Koohy, Hashem, Borrow, Persephone, Shugay, Mikhail
Publicado 2021

HLA variants have different preferences to present proteins with specific molecular functions which are complemented in frequent haplotypes

por Karnaukhov, Vadim, Paes, Wayne, Woodhouse, Isaac B., Partridge, Thomas, Nicastri, Annalisa, Brackenridge, Simon, Shcherbinin, Dmitrii, Chudakov, Dmitry M., Zvyagin, Ivan V., Ternette, Nicola, Koohy, Hashem, Borrow, Persephone, Shugay, Mikhail
Publicado 2022

Spatiotemporal analysis of human intestinal development at single-cell resolution

por Fawkner-Corbett, David, Antanaviciute, Agne, Parikh, Kaushal, Jagielowicz, Marta, Gerós, Ana Sousa, Gupta, Tarun, Ashley, Neil, Khamis, Doran, Fowler, Darren, Morrissey, Edward, Cunningham, Chris, Johnson, Paul R.V., Koohy, Hashem, Simmons, Alison
Publicado 2021

Dual RNA sequencing reveals dendritic cell reprogramming in response to typhoidal Salmonella invasion

por Aulicino, Anna, Antanaviciute, Agne, Frost, Joe, Sousa Geros, Ana, Mellado, Esther, Attar, Moustafa, Jagielowicz, Marta, Hublitz, Philip, Sinz, Julia, Preciado-Llanes, Lorena, Napolitani, Giorgio, Bowden, Rory, Koohy, Hashem, Drakesmith, Hal, Simmons, Alison
Publicado 2022

Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination

por Bolland, Daniel J., Koohy, Hashem, Wood, Andrew L., Matheson, Louise S., Krueger, Felix, Stubbington, Michael J.T., Baizan-Edge, Amanda, Chovanec, Peter, Stubbs, Bryony A., Tabbada, Kristina, Andrews, Simon R., Spivakov, Mikhail, Corcoran, Anne E.
Publicado 2016