Applying an Empirical Hydropathic Forcefield in Refinement May Improve Low-Resolution Protein X-Ray Crystal Structures

por Koparde, Vishal N., Scarsdale, J. Neel, Kellogg, Glen E.
Publicado 2011

MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing

por Parikh, Hardik I., Koparde, Vishal N., Bradley, Steven P., Buck, Gregory A., Sheth, Nihar U.
Publicado 2016

PERK signaling through C/EBPδ contributes to ER stress-induced expression of immunomodulatory and tumor promoting chemokines by cancer cells

por Sheshadri, Namratha, Poria, Dipak K., Sharan, Shikha, Hu, Ying, Yan, Chunhua, Koparde, Vishal N., Balamurugan, Kuppusamy, Sterneck, Esta
Publicado 2021

A virus-induced circular RNA maintains latent infection of Kaposi’s sarcoma herpesvirus

por Tagawa, Takanobu, Oh, Daniel, Dremel, Sarah, Mahesh, Guruswamy, Koparde, Vishal N., Duncan, Gerard, Andresson, Thorkell, Ziegelbauer, Joseph M.
Publicado 2023

Interferon induced circRNAs escape herpesvirus host shutoff and suppress lytic infection

por Dremel, Sarah E., Tagawa, Takanobu, Koparde, Vishal N., Arbuckle, Jesse H., Kristie, Thomas M., Krug, Laurie T., Ziegelbauer, Joseph M.
Publicado 2023

Characterizing Expression and Regulation of Gamma-Herpesviral Circular RNAs

por Tagawa, Takanobu, Oh, Daniel, Santos, Jerico, Dremel, Sarah, Mahesh, Guruswamy, Uldrick, Thomas S., Yarchoan, Robert, Kopardé, Vishal N., Ziegelbauer, Joseph M.
Publicado 2021

Chromatin Accessibility Landscape of Human Triple-negative Breast Cancer Cell Lines Reveals Variation by Patient Donor Ancestry

por Harris, Alexandra R., Panigrahi, Gatikrushna, Liu, Huaitian, Koparde, Vishal N., Bailey-Whyte, Maeve, Dorsey, Tiffany H., Yates, Clayton C., Ambs, Stefan
Publicado 2023

Loss of myeloid‐specific lamin A/C drives lung metastasis through Gfi‐1 and C/EBPε‐mediated granulocytic differentiation

por Ishii, Hiroki, Park, Woo‐Yong, So, Jaeyoung, Kuhn, Skyler, Koparde, Vishal N., Pang, Yanli, Greten, Tim F., Hollander, M. Christine, Yang, Li
Publicado 2020

Unique roles of vaginal Megasphaera phylotypes in reproductive health

por Glascock, Abigail L., Jimenez, Nicole R., Boundy, Sam, Koparde, Vishal N., Brooks, J. Paul, Edwards, David J., Strauss III, Jerome F., Jefferson, Kimberly K., Serrano, Myrna G., Buck, Gregory A., Fettweis, Jennifer M.
Publicado 2021

Sequence homology between HLA-bound cytomegalovirus and human peptides: A potential trigger for alloreactivity

por Hall, Charles E., Koparde, Vishal N., Jameson-Lee, Maximilian, Elnasseh, Abdelrhman G., Scalora, Allison F., Kobulnicky, David J., Serrano, Myrna G., Roberts, Catherine H., Buck, Gregory A., Neale, Michael C., Nixon, Daniel E., Toor, Amir A.
Publicado 2017

Genomic comparison of Trypanosoma conorhini and Trypanosoma rangeli to Trypanosoma cruzi strains of high and low virulence

por Bradwell, Katie R, Koparde, Vishal N, Matveyev, Andrey V, Serrano, Myrna G, Alves, João M P, Parikh, Hardik, Huang, Bernice, Lee, Vladimir, Espinosa-Alvarez, Oneida, Ortiz, Paola A, Costa-Martins, André G, Teixeira, Marta M G, Buck, Gregory A
Publicado 2018

ONC201 kills breast cancer cells in vitro by targeting mitochondria

por Greer, Yoshimi Endo, Porat-Shliom, Natalie, Nagashima, Kunio, Stuelten, Christina, Crooks, Dan, Koparde, Vishal N., Gilbert, Samuel F., Islam, Celia, Ubaldini, Ashley, Ji, Yun, Gattinoni, Luca, Soheilian, Ferri, Wang, Xiantao, Hafner, Markus, Shetty, Jyoti, Tran, Bao, Jailwala, Parthav, Cam, Maggie, Lang, Martin, Voeller, Donna, Reinhold, William C., Rajapakse, Vinodh, Pommier, Yves, Weigert, Roberto, Linehan, W. Marston, Lipkowitz, Stanley
Publicado 2018

The vaginal microbiome and preterm birth

por Fettweis, Jennifer M., Serrano, Myrna G., Brooks, J. Paul, Edwards, David J., Girerd, Philippe H., Parikh, Hardik I., Huang, Bernice, Arodz, Tom J., Edupuganti, Laahirie, Glascock, Abigail L., Xu, Jie, Jimenez, Nicole R., Vivadelli, Stephany C., Fong, Stephen S., Sheth, Nihar U., Jean, Sophonie, Lee, Vladimir, Bokhari, Yahya A., Lara, Ana M., Mistry, Shreni D., Duckworth, Robert A., Bradley, Steven P., Koparde, Vishal N., Orenda, X. Valentine, Milton, Sarah H., Rozycki, Sarah K., Matveyev, Andrey V., Wright, Michelle L., Huzurbazar, Snehalata V., Jackson, Eugenie M., Smirnova, Ekaterina, Korlach, Jonas, Tsai, Yu-Chih, Dickinson, Molly R., Brooks, Jamie L., Drake, Jennifer I., Chaffin, Donald O., Sexton, Amber L., Gravett, Michael G., Rubens, Craig E., Wijesooriya, N. Romesh, Hendricks-Muñoz, Karen D., Jefferson, Kimberly K., Strauss, Jerome F., Buck, Gregory A.
Publicado 2019