ScaffViz: visualizing metagenome assemblies

por Koren, Sergey, Treangen, Todd, Pop, Mihai
Publicado 2011

Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps

por Dilthey, Alexander T., Jain, Chirag, Koren, Sergey, Phillippy, Adam M.
Publicado 2019

Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph

por Cheng, Haoyu, Asri, Mobin, Lucas, Julian, Koren, Sergey, Li, Heng
Publicado 2023

An algorithm for automated closure during assembly

por Koren, Sergey, Miller, Jason R, Walenz, Brian P, Sutton, Granger
Publicado 2010

Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies

por Rhie, Arang, Walenz, Brian P., Koren, Sergey, Phillippy, Adam M.
Publicado 2020

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

por Treangen, Todd J, Ondov, Brian D, Koren, Sergey, Phillippy, Adam M
Publicado 2014

Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers

por Davison, Michelle, Treangen, Todd J., Koren, Sergey, Pop, Mihai, Bhaya, Devaki
Publicado 2016

Scaffolding of long read assemblies using long range contact information

por Ghurye, Jay, Pop, Mihai, Koren, Sergey, Bickhart, Derek, Chin, Chen-Shan
Publicado 2017

A fast adaptive algorithm for computing whole-genome homology maps

por Jain, Chirag, Koren, Sergey, Dilthey, Alexander, Phillippy, Adam M, Aluru, Srinivas
Publicado 2018

RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification

por Nasko, Daniel J., Koren, Sergey, Phillippy, Adam M., Treangen, Todd J.
Publicado 2018

MetAMOS: a metagenomic assembly and analysis pipeline for AMOS

por Treangen, Todd J, Koren, Sergey, Astrovskaya, Irina, Sommer, Dan, Liu, Bo, Pop, Mihai
Publicado 2011

Automated ensemble assembly and validation of microbial genomes

por Koren, Sergey, Treangen, Todd J, Hill, Christopher M, Pop, Mihai, Phillippy, Adam M
Publicado 2014

De novo likelihood-based measures for comparing genome assemblies

por Ghodsi, Mohammadreza, Hill, Christopher M, Astrovskaya, Irina, Lin, Henry, Sommer, Dan D, Koren, Sergey, Pop, Mihai
Publicado 2013

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

por Koren, Sergey, Walenz, Brian P., Berlin, Konstantin, Miller, Jason R., Bergman, Nicholas H., Phillippy, Adam M.
Publicado 2017

De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads

por Eccles, David, Chandler, Jodie, Camberis, Mali, Henrissat, Bernard, Koren, Sergey, Le Gros, Graham, Ewbank, Jonathan J.
Publicado 2018

A chromosome-scale assembly of the major African malaria vector Anopheles funestus

por Ghurye, Jay, Koren, Sergey, Small, Scott T, Redmond, Seth, Howell, Paul, Phillippy, Adam M, Besansky, Nora J
Publicado 2019

Integrating Hi-C links with assembly graphs for chromosome-scale assembly

por Ghurye, Jay, Rhie, Arang, Walenz, Brian P., Schmitt, Anthony, Selvaraj, Siddarth, Pop, Mihai, Phillippy, Adam M., Koren, Sergey
Publicado 2019

Mash Screen: high-throughput sequence containment estimation for genome discovery

por Ondov, Brian D., Starrett, Gabriel J., Sappington, Anna, Kostic, Aleksandra, Koren, Sergey, Buck, Christopher B., Phillippy, Adam M.
Publicado 2019

Mash: fast genome and metagenome distance estimation using MinHash

por Ondov, Brian D., Treangen, Todd J., Melsted, Páll, Mallonee, Adam B., Bergman, Nicholas H., Koren, Sergey, Phillippy, Adam M.
Publicado 2016

A draft genome sequence for the Ixodes scapularis cell line, ISE6

por Miller, Jason R., Koren, Sergey, Dilley, Kari A., Harkins, Derek M., Stockwell, Timothy B., Shabman, Reed S., Sutton, Granger G.
Publicado 2018