Side-chain Packing Using SE(3)-Transformer

por Jindal, Akhil, Kotelnikov, Sergei, Padhorny, Dzmitry, Kozakov, Dima, Zhu, Yimin, Chowdhury, Rezaul, Vajda, Sandor
Publicado 2022

Conservation of binding properties in protein models

por Egbert, Megan, Porter, Kathryn A., Ghani, Usman, Kotelnikov, Sergei, Nguyen, Thu, Ashizawa, Ryota, Kozakov, Dima, Vajda, Sandor
Publicado 2021

Elucidation of protein function using computational docking and hotspot analysis by ClusPro and FTMap

por Jones, George, Jindal, Akhil, Ghani, Usman, Kotelnikov, Sergei, Egbert, Megan, Hashemi, Nasser, Vajda, Sandor, Padhorny, Dzmitry, Kozakov, Dima
Publicado 2022

Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery

por Havugimana, Pierre C., Goel, Raghuveera Kumar, Phanse, Sadhna, Youssef, Ahmed, Padhorny, Dzmitry, Kotelnikov, Sergei, Kozakov, Dima, Emili, Andrew
Publicado 2022

AbAdapt: an adaptive approach to predicting antibody–antigen complex structures from sequence

por Davila, Ana, Xu, Zichang, Li, Songling, Rozewicki, John, Wilamowski, Jan, Kotelnikov, Sergei, Kozakov, Dima, Teraguchi, Shunsuke, Standley, Daron M
Publicado 2022

Light-mediated multi-target protein degradation using arylazopyrazole photoswitchable PROTACs (AP-PROTACs)

por Zhang, Qisi, Kounde, Cyrille S., Mondal, Milon, Greenfield, Jake L., Baker, Jennifer R., Kotelnikov, Sergei, Ignatov, Mikhail, Tinworth, Christopher P., Zhang, Leran, Conole, Daniel, De Vita, Elena, Kozakov, Dima, McCluskey, Adam, Harling, John D., Fuchter, Matthew J., Tate, Edward W.
Publicado 2022

Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT

por Paul, Indranil, Bolzan, Dante, Youssef, Ahmed, Gagnon, Keith A., Hook, Heather, Karemore, Gopal, Oliphant, Michael U. J., Lin, Weiwei, Liu, Qian, Phanse, Sadhna, White, Carl, Padhorny, Dzmitry, Kotelnikov, Sergei, Chen, Christopher S., Hu, Pingzhao, Denis, Gerald V., Kozakov, Dima, Raught, Brian, Siggers, Trevor, Wuchty, Stefan, Muthuswamy, Senthil K., Emili, Andrew
Publicado 2023

Protein folds vs. protein folding: Differing questions, different challenges

por Chen, Shi-Jie, Hassan, Mubashir, Jernigan, Robert L., Jia, Kejue, Kihara, Daisuke, Kloczkowski, Andrzej, Kotelnikov, Sergei, Kozakov, Dima, Liang, Jie, Liwo, Adam, Matysiak, Silvina, Meller, Jarek, Micheletti, Cristian, Mitchell, Julie C., Mondal, Sayantan, Nussinov, Ruth, Okazaki, Kei-ichi, Padhorny, Dzmitry, Skolnick, Jeffrey, Sosnick, Tobin R., Stan, George, Vakser, Ilya, Zou, Xiaoqin, Rose, George D.
Publicado 2022