On the amyloid datasets used for training PAFIG ­ how (not) to extend the experimental dataset of hexapeptides

por Kotulska, Malgorzata, Unold, Olgierd
Publicado 2013

FISH Amyloid – a new method for finding amyloidogenic segments in proteins based on site specific co-occurence of aminoacids

por Gasior, Pawel, Kotulska, Malgorzata
Publicado 2014

Automated method to differentiate between native and mirror protein models obtained from contact maps

por Kurczynska, Monika, Kotulska, Malgorzata
Publicado 2018

Characteristics of protein residue-residue contacts and their application in contact prediction

por Wozniak, Pawel P., Kotulska, Malgorzata
Publicado 2014

PATH - Prediction of Amyloidogenicity by Threading and Machine Learning

por Wojciechowski, Jakub W., Kotulska, Małgorzata
Publicado 2020

Topological analysis as a tool for detection of abnormalities in protein–protein interaction data

por Nowakowska, Alicja W, Kotulska, Malgorzata
Publicado 2022

Machine learning methods can replace 3D profile method in classification of amyloidogenic hexapeptides

por Stanislawski, Jerzy, Kotulska, Malgorzata, Unold, Olgierd
Publicado 2013

Probabilistic grammatical model for helix‐helix contact site classification

por Dyrka, Witold, Nebel, Jean‐Christophe, Kotulska, Malgorzata
Publicado 2013

Quality assessment of protein model-structures based on structural and functional similarities

por Konopka, Bogumil M, Nebel, Jean-Christophe, Kotulska, Malgorzata
Publicado 2012

Metastable Pores at the Onset of Constant-Current Electroporation

por Kotulska, Malgorzata, Basalyga, Joanna, Derylo, Maria B., Sadowski, Przemyslaw
Publicado 2010

Automated Procedure for Contact-Map-Based Protein Structure Reconstruction

por Konopka, Bogumil M., Ciombor, Marika, Kurczynska, Monika, Kotulska, Malgorzata
Publicado 2014

Applying PyRosetta molecular energies to separate properly oriented protein models from mirror models, obtained from contact maps

por Kurczynska, Monika, Kania, Ewa, Konopka, Bogumil M., Kotulska, Malgorzata
Publicado 2016

Water Pores in Planar Lipid Bilayers at Fast and Slow Rise of Transmembrane Voltage

por Maček Lebar, Alenka, Miklavčič, Damijan, Kotulska, Malgorzata, Kramar, Peter
Publicado 2021

Amyloidogenic motifs revealed by n-gram analysis

por Burdukiewicz, Michał, Sobczyk, Piotr, Rödiger, Stefan, Duda-Madej, Anna, Mackiewicz, Paweł, Kotulska, Małgorzata
Publicado 2017

The Effect of Millisecond Pulsed Electric Fields (msPEF) on Intracellular Drug Transport with Negatively Charged Large Nanocarriers Made of Solid Lipid Nanoparticles (SLN): In Vitr...

por Kulbacka, Julita, Pucek, Agata, Wilk, Kazimiera Anna, Dubińska-Magiera, Magda, Rossowska, Joanna, Kulbacki, Marek, Kotulska, Małgorzata
Publicado 2016

Variability of Amyloid Propensity in Imperfect Repeats of CsgA Protein of Salmonella enterica and Escherichia coli

por Szulc, Natalia, Gąsior-Głogowska, Marlena, Wojciechowski, Jakub W., Szefczyk, Monika, Żak, Andrzej M., Burdukiewicz, Michał, Kotulska, Malgorzata
Publicado 2021

Electric Field-Assisted Delivery of Photofrin to Human Breast Carcinoma Cells

por Wezgowiec, Joanna, Derylo, Maria B., Teissie, Justin, Orio, Julie, Rols, Marie-Pierre, Kulbacka, Julita, Saczko, Jolanta, Kotulska, Malgorzata
Publicado 2013

Bioinformatics methods for identification of amyloidogenic peptides show robustness to misannotated training data

por Szulc, Natalia, Burdukiewicz, Michał, Gąsior-Głogowska, Marlena, Wojciechowski, Jakub W., Chilimoniuk, Jarosław, Mackiewicz, Paweł, Šneideris, Tomas, Smirnovas, Vytautas, Kotulska, Malgorzata
Publicado 2021

AmyloGraph: a comprehensive database of amyloid–amyloid interactions

por Burdukiewicz, Michał, Rafacz, Dominik, Barbach, Agnieszka, Hubicka, Katarzyna, Bąkała, Laura, Lassota, Anna, Stecko, Jakub, Szymańska, Natalia, Wojciechowski, Jakub W, Kozakiewicz, Dominika, Szulc, Natalia, Chilimoniuk, Jarosław, Jęśkowiak, Izabela, Gąsior-Głogowska, Marlena, Kotulska, Małgorzata
Publicado 2022

A spatiotemporal reconstruction of the C. elegans pharyngeal cuticle reveals a structure rich in phase-separating proteins

por Kamal, Muntasir, Tokmakjian, Levon, Knox, Jessica, Mastrangelo, Peter, Ji, Jingxiu, Cai, Hao, Wojciechowski, Jakub W, Hughes, Michael P, Takács, Kristóf, Chu, Xiaoquan, Pei, Jianfeng, Grolmusz, Vince, Kotulska, Malgorzata, Forman-Kay, Julie Deborah, Roy, Peter J
Publicado 2022