Shape-Restrained Modeling of Protein–Small-Molecule Complexes with High Ambiguity Driven DOCKing

por Koukos, Panagiotis I., Réau, Manon, Bonvin, Alexandre M. J. J.
Publicado 2021

Protein–ligand pose and affinity prediction: Lessons from D3R Grand Challenge 3

por Koukos, Panagiotis I., Xue, Li C., Bonvin, Alexandre M. J. J.
Publicado 2018

PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes

por Jiménez-García, Brian, Elez, Katarina, Koukos, Panagiotis I, Bonvin, Alexandre Mjj, Vangone, Anna
Publicado 2019

MENSAdb: a thorough structural analysis of membrane protein dimers

por Matos-Filipe, Pedro, Preto, António J, Koukos, Panagiotis I, Mourão, Joana, Bonvin, Alexandre M J J, Moreira, Irina S
Publicado 2021

Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem

por Honorato, Rodrigo V., Koukos, Panagiotis I., Jiménez-García, Brian, Tsaregorodtsev, Andrei, Verlato, Marco, Giachetti, Andrea, Rosato, Antonio, Bonvin, Alexandre M. J. J.
Publicado 2021

A click-flipped enzyme substrate boosts the performance of the diagnostic screening for Hunter syndrome

por Schwarz, Markus, Skrinjar, Philipp, Fink, Michael J., Kronister, Stefan, Mechtler, Thomas, Koukos, Panagiotis I., Bonvin, Alexandre M. J. J., Kasper, David C., Mikula, Hannes
Publicado 2020

SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots

por Moreira, Irina S., Koukos, Panagiotis I., Melo, Rita, Almeida, Jose G., Preto, Antonio J., Schaarschmidt, Joerg, Trellet, Mikael, Gümüş, Zeynep H., Costa, Joaquim, Bonvin, Alexandre M. J. J.
Publicado 2017

Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2

por Kurkcuoglu, Zeynep, Koukos, Panagiotis I., Citro, Nevia, Trellet, Mikael E., Rodrigues, J. P. G. L. M., Moreira, Irina S., Roel-Touris, Jorge, Melquiond, Adrien S. J., Geng, Cunliang, Schaarschmidt, Jörg, Xue, Li C., Vangone, Anna, Bonvin, A. M. J. J.
Publicado 2017

A novel antifolate suppresses growth of FPGS-deficient cells and overcomes methotrexate resistance

por van der Krift, Felix, Zijlmans, Dick W, Shukla, Rhythm, Javed, Ali, Koukos, Panagiotis I, Schwarz, Laura LE, Timmermans-Sprang, Elpetra PM, Maas, Peter EM, Gahtory, Digvijay, van den Nieuwboer, Maurits, Mol, Jan A, Strous, Ger J, Bonvin, Alexandre MJJ, van der Stelt, Mario, Veldhuizen, Edwin JA, Weingarth, Markus, Vermeulen, Michiel, Klumperman, Judith, Maurice, Madelon M
Publicado 2023