SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells

Yazar: Moody, Jonathan, Kouno, Tsukasa, Chang, Jen-Chien, Ando, Yoshinari, Carninci, Piero, Shin, Jay W, Hon, Chung-Chau
Baskı/Yayın Bilgisi 2022

Temporal dynamics and transcriptional control using single-cell gene expression analysis

Yazar: Kouno, Tsukasa, de Hoon, Michiel, Mar, Jessica C, Tomaru, Yasuhiro, Kawano, Mitsuoki, Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Shin, Jay W
Baskı/Yayın Bilgisi 2013

Decoding Neuronal Diversification by Multiplexed Single-cell RNA-Seq

Yazar: Luginbühl, Joachim, Kouno, Tsukasa, Nakano, Rei, Chater, Thomas E., Sivaraman, Divya M., Kishima, Mami, Roudnicky, Filip, Carninci, Piero, Plessy, Charles, Shin, Jay W.
Baskı/Yayın Bilgisi 2021

SCPortalen: human and mouse single-cell centric database

Yazar: Abugessaisa, Imad, Noguchi, Shuhei, Böttcher, Michael, Hasegawa, Akira, Kouno, Tsukasa, Kato, Sachi, Tada, Yuhki, Ura, Hiroki, Abe, Kuniya, Shin, Jay W, Plessy, Charles, Carninci, Piero, Kasukawa, Takeya
Baskı/Yayın Bilgisi 2018

Microglia integration into human midbrain organoids leads to increased neuronal maturation and functionality

Yazar: Sabate‐Soler, Sonia, Nickels, Sarah Louise, Saraiva, Cláudia, Berger, Emanuel, Dubonyte, Ugne, Barmpa, Kyriaki, Lan, Yan Jun, Kouno, Tsukasa, Jarazo, Javier, Robertson, Graham, Sharif, Jafar, Koseki, Haruhiko, Thome, Christian, Shin, Jay W., Cowley, Sally A., Schwamborn, Jens C.
Baskı/Yayın Bilgisi 2022

Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians

Yazar: Hashimoto, Kosuke, Kouno, Tsukasa, Ikawa, Tomokatsu, Hayatsu, Norihito, Miyajima, Yurina, Yabukami, Haruka, Terooatea, Tommy, Sasaki, Takashi, Suzuki, Takahiro, Valentine, Matthew, Pascarella, Giovanni, Okazaki, Yasushi, Suzuki, Harukazu, Shin, Jay W., Minoda, Aki, Taniuchi, Ichiro, Okano, Hideyuki, Arai, Yasumichi, Hirose, Nobuyoshi, Carninci, Piero
Baskı/Yayın Bilgisi 2019

LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C

Yazar: Ducoli, Luca, Agrawal, Saumya, Sibler, Eliane, Kouno, Tsukasa, Tacconi, Carlotta, Hon, Chung-Chao, Berger, Simone D., Müllhaupt, Daniela, He, Yuliang, Kim, Jihye, D’Addio, Marco, Dieterich, Lothar C., Carninci, Piero, de Hoon, Michiel J. L., Shin, Jay W., Detmar, Michael
Baskı/Yayın Bilgisi 2021

Single-Cell RNA-Seq Reveals LRRC75A-Expressing Cell Population Involved in VEGF Secretion of Multipotent Mesenchymal Stromal/Stem Cells Under Ischemia

Yazar: Miura, Takumi, Kouno, Tsukasa, Takano, Megumi, Kuroda, Takuya, Yamamoto, Yumiko, Kusakawa, Shinji, Morioka, Masaki Suimye, Sugawara, Tohru, Hirai, Takamasa, Yasuda, Satoshi, Sawada, Rumi, Matsuyama, Satoko, Kawaji, Hideya, Kasukawa, Takeya, Itoh, Masayoshi, Matsuyama, Akifumi, Shin, Jay W, Umezawa, Akihiro, Kawai, Jun, Sato, Yoji
Baskı/Yayın Bilgisi 2023

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

Yazar: Kouno, Tsukasa, Moody, Jonathan, Kwon, Andrew Tae-Jun, Shibayama, Youtaro, Kato, Sachi, Huang, Yi, Böttcher, Michael, Motakis, Efthymios, Mendez, Mickaël, Severin, Jessica, Luginbühl, Joachim, Abugessaisa, Imad, Hasegawa, Akira, Takizawa, Satoshi, Arakawa, Takahiro, Furuno, Masaaki, Ramalingam, Naveen, West, Jay, Suzuki, Harukazu, Kasukawa, Takeya, Lassmann, Timo, Hon, Chung-Chau, Arner, Erik, Carninci, Piero, Plessy, Charles, Shin, Jay W.
Baskı/Yayın Bilgisi 2019

Brainstem Organoids From Human Pluripotent Stem Cells

Yazar: Eura, Nobuyuki, Matsui, Takeshi K., Luginbühl, Joachim, Matsubayashi, Masaya, Nanaura, Hitoki, Shiota, Tomo, Kinugawa, Kaoru, Iguchi, Naohiko, Kiriyama, Takao, Zheng, Canbin, Kouno, Tsukasa, Lan, Yan Jun, Kongpracha, Pornparn, Wiriyasermkul, Pattama, Sakaguchi, Yoshihiko M., Nagata, Riko, Komeda, Tomoya, Morikawa, Naritaka, Kitayoshi, Fumika, Jong, Miyong, Kobashigawa, Shinko, Nakanishi, Mari, Hasegawa, Masatoshi, Saito, Yasuhiko, Shiromizu, Takashi, Nishimura, Yuhei, Kasai, Takahiko, Takeda, Maiko, Kobayashi, Hiroshi, Inagaki, Yusuke, Tanaka, Yasuhito, Makinodan, Manabu, Kishimoto, Toshifumi, Kuniyasu, Hiroki, Nagamori, Shushi, Muotri, Alysson R., Shin, Jay W., Sugie, Kazuma, Mori, Eiichiro
Baskı/Yayın Bilgisi 2020

Functional annotation of human long noncoding RNAs via molecular phenotyping

Yazar: Ramilowski, Jordan A., Yip, Chi Wai, Agrawal, Saumya, Chang, Jen-Chien, Ciani, Yari, Kulakovskiy, Ivan V., Mendez, Mickaël, Ooi, Jasmine Li Ching, Ouyang, John F., Parkinson, Nick, Petri, Andreas, Roos, Leonie, Severin, Jessica, Yasuzawa, Kayoko, Abugessaisa, Imad, Akalin, Altuna, Antonov, Ivan V., Arner, Erik, Bonetti, Alessandro, Bono, Hidemasa, Borsari, Beatrice, Brombacher, Frank, Cameron, Christopher J.F., Cannistraci, Carlo Vittorio, Cardenas, Ryan, Cardon, Melissa, Chang, Howard, Dostie, Josée, Ducoli, Luca, Favorov, Alexander, Fort, Alexandre, Garrido, Diego, Gil, Noa, Gimenez, Juliette, Guler, Reto, Handoko, Lusy, Harshbarger, Jayson, Hasegawa, Akira, Hasegawa, Yuki, Hashimoto, Kosuke, Hayatsu, Norihito, Heutink, Peter, Hirose, Tetsuro, Imada, Eddie L., Itoh, Masayoshi, Kaczkowski, Bogumil, Kanhere, Aditi, Kawabata, Emily, Kawaji, Hideya, Kawashima, Tsugumi, Kelly, S. Thomas, Kojima, Miki, Kondo, Naoto, Koseki, Haruhiko, Kouno, Tsukasa, Kratz, Anton, Kurowska-Stolarska, Mariola, Kwon, Andrew Tae Jun, Leek, Jeffrey, Lennartsson, Andreas, Lizio, Marina, López-Redondo, Fernando, Luginbühl, Joachim, Maeda, Shiori, Makeev, Vsevolod J., Marchionni, Luigi, Medvedeva, Yulia A., Minoda, Aki, Müller, Ferenc, Muñoz-Aguirre, Manuel, Murata, Mitsuyoshi, Nishiyori, Hiromi, Nitta, Kazuhiro R., Noguchi, Shuhei, Noro, Yukihiko, Nurtdinov, Ramil, Okazaki, Yasushi, Orlando, Valerio, Paquette, Denis, Parr, Callum J.C., Rackham, Owen J.L., Rizzu, Patrizia, Sánchez Martinez, Diego Fernando, Sandelin, Albin, Sanjana, Pillay, Semple, Colin A.M., Shibayama, Youtaro, Sivaraman, Divya M., Suzuki, Takahiro, Szumowski, Suzannah C., Tagami, Michihira, Taylor, Martin S., Terao, Chikashi, Thodberg, Malte, Thongjuea, Supat, Tripathi, Vidisha, Ulitsky, Igor, Verardo, Roberto, Vorontsov, Ilya E., Yamamoto, Chinatsu, Young, Robert S., Baillie, J. Kenneth, Forrest, Alistair R.R., Guigó, Roderic, Hoffman, Michael M., Hon, Chung Chau, Kasukawa, Takeya, Kauppinen, Sakari, Kere, Juha, Lenhard, Boris, Schneider, Claudio, Suzuki, Harukazu, Yagi, Ken, de Hoon, Michiel J.L., Shin, Jay W., Carninci, Piero
Baskı/Yayın Bilgisi 2020