SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells

ανά Moody, Jonathan, Kouno, Tsukasa, Chang, Jen-Chien, Ando, Yoshinari, Carninci, Piero, Shin, Jay W, Hon, Chung-Chau
Έκδοση 2022

Temporal dynamics and transcriptional control using single-cell gene expression analysis

ανά Kouno, Tsukasa, de Hoon, Michiel, Mar, Jessica C, Tomaru, Yasuhiro, Kawano, Mitsuoki, Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Shin, Jay W
Έκδοση 2013

Decoding Neuronal Diversification by Multiplexed Single-cell RNA-Seq

ανά Luginbühl, Joachim, Kouno, Tsukasa, Nakano, Rei, Chater, Thomas E., Sivaraman, Divya M., Kishima, Mami, Roudnicky, Filip, Carninci, Piero, Plessy, Charles, Shin, Jay W.
Έκδοση 2021

SCPortalen: human and mouse single-cell centric database

ανά Abugessaisa, Imad, Noguchi, Shuhei, Böttcher, Michael, Hasegawa, Akira, Kouno, Tsukasa, Kato, Sachi, Tada, Yuhki, Ura, Hiroki, Abe, Kuniya, Shin, Jay W, Plessy, Charles, Carninci, Piero, Kasukawa, Takeya
Έκδοση 2018

Microglia integration into human midbrain organoids leads to increased neuronal maturation and functionality

ανά Sabate‐Soler, Sonia, Nickels, Sarah Louise, Saraiva, Cláudia, Berger, Emanuel, Dubonyte, Ugne, Barmpa, Kyriaki, Lan, Yan Jun, Kouno, Tsukasa, Jarazo, Javier, Robertson, Graham, Sharif, Jafar, Koseki, Haruhiko, Thome, Christian, Shin, Jay W., Cowley, Sally A., Schwamborn, Jens C.
Έκδοση 2022

Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians

ανά Hashimoto, Kosuke, Kouno, Tsukasa, Ikawa, Tomokatsu, Hayatsu, Norihito, Miyajima, Yurina, Yabukami, Haruka, Terooatea, Tommy, Sasaki, Takashi, Suzuki, Takahiro, Valentine, Matthew, Pascarella, Giovanni, Okazaki, Yasushi, Suzuki, Harukazu, Shin, Jay W., Minoda, Aki, Taniuchi, Ichiro, Okano, Hideyuki, Arai, Yasumichi, Hirose, Nobuyoshi, Carninci, Piero
Έκδοση 2019

LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C

ανά Ducoli, Luca, Agrawal, Saumya, Sibler, Eliane, Kouno, Tsukasa, Tacconi, Carlotta, Hon, Chung-Chao, Berger, Simone D., Müllhaupt, Daniela, He, Yuliang, Kim, Jihye, D’Addio, Marco, Dieterich, Lothar C., Carninci, Piero, de Hoon, Michiel J. L., Shin, Jay W., Detmar, Michael
Έκδοση 2021

Single-Cell RNA-Seq Reveals LRRC75A-Expressing Cell Population Involved in VEGF Secretion of Multipotent Mesenchymal Stromal/Stem Cells Under Ischemia

ανά Miura, Takumi, Kouno, Tsukasa, Takano, Megumi, Kuroda, Takuya, Yamamoto, Yumiko, Kusakawa, Shinji, Morioka, Masaki Suimye, Sugawara, Tohru, Hirai, Takamasa, Yasuda, Satoshi, Sawada, Rumi, Matsuyama, Satoko, Kawaji, Hideya, Kasukawa, Takeya, Itoh, Masayoshi, Matsuyama, Akifumi, Shin, Jay W, Umezawa, Akihiro, Kawai, Jun, Sato, Yoji
Έκδοση 2023

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

ανά Kouno, Tsukasa, Moody, Jonathan, Kwon, Andrew Tae-Jun, Shibayama, Youtaro, Kato, Sachi, Huang, Yi, Böttcher, Michael, Motakis, Efthymios, Mendez, Mickaël, Severin, Jessica, Luginbühl, Joachim, Abugessaisa, Imad, Hasegawa, Akira, Takizawa, Satoshi, Arakawa, Takahiro, Furuno, Masaaki, Ramalingam, Naveen, West, Jay, Suzuki, Harukazu, Kasukawa, Takeya, Lassmann, Timo, Hon, Chung-Chau, Arner, Erik, Carninci, Piero, Plessy, Charles, Shin, Jay W.
Έκδοση 2019

Brainstem Organoids From Human Pluripotent Stem Cells

ανά Eura, Nobuyuki, Matsui, Takeshi K., Luginbühl, Joachim, Matsubayashi, Masaya, Nanaura, Hitoki, Shiota, Tomo, Kinugawa, Kaoru, Iguchi, Naohiko, Kiriyama, Takao, Zheng, Canbin, Kouno, Tsukasa, Lan, Yan Jun, Kongpracha, Pornparn, Wiriyasermkul, Pattama, Sakaguchi, Yoshihiko M., Nagata, Riko, Komeda, Tomoya, Morikawa, Naritaka, Kitayoshi, Fumika, Jong, Miyong, Kobashigawa, Shinko, Nakanishi, Mari, Hasegawa, Masatoshi, Saito, Yasuhiko, Shiromizu, Takashi, Nishimura, Yuhei, Kasai, Takahiko, Takeda, Maiko, Kobayashi, Hiroshi, Inagaki, Yusuke, Tanaka, Yasuhito, Makinodan, Manabu, Kishimoto, Toshifumi, Kuniyasu, Hiroki, Nagamori, Shushi, Muotri, Alysson R., Shin, Jay W., Sugie, Kazuma, Mori, Eiichiro
Έκδοση 2020

Functional annotation of human long noncoding RNAs via molecular phenotyping

ανά Ramilowski, Jordan A., Yip, Chi Wai, Agrawal, Saumya, Chang, Jen-Chien, Ciani, Yari, Kulakovskiy, Ivan V., Mendez, Mickaël, Ooi, Jasmine Li Ching, Ouyang, John F., Parkinson, Nick, Petri, Andreas, Roos, Leonie, Severin, Jessica, Yasuzawa, Kayoko, Abugessaisa, Imad, Akalin, Altuna, Antonov, Ivan V., Arner, Erik, Bonetti, Alessandro, Bono, Hidemasa, Borsari, Beatrice, Brombacher, Frank, Cameron, Christopher J.F., Cannistraci, Carlo Vittorio, Cardenas, Ryan, Cardon, Melissa, Chang, Howard, Dostie, Josée, Ducoli, Luca, Favorov, Alexander, Fort, Alexandre, Garrido, Diego, Gil, Noa, Gimenez, Juliette, Guler, Reto, Handoko, Lusy, Harshbarger, Jayson, Hasegawa, Akira, Hasegawa, Yuki, Hashimoto, Kosuke, Hayatsu, Norihito, Heutink, Peter, Hirose, Tetsuro, Imada, Eddie L., Itoh, Masayoshi, Kaczkowski, Bogumil, Kanhere, Aditi, Kawabata, Emily, Kawaji, Hideya, Kawashima, Tsugumi, Kelly, S. Thomas, Kojima, Miki, Kondo, Naoto, Koseki, Haruhiko, Kouno, Tsukasa, Kratz, Anton, Kurowska-Stolarska, Mariola, Kwon, Andrew Tae Jun, Leek, Jeffrey, Lennartsson, Andreas, Lizio, Marina, López-Redondo, Fernando, Luginbühl, Joachim, Maeda, Shiori, Makeev, Vsevolod J., Marchionni, Luigi, Medvedeva, Yulia A., Minoda, Aki, Müller, Ferenc, Muñoz-Aguirre, Manuel, Murata, Mitsuyoshi, Nishiyori, Hiromi, Nitta, Kazuhiro R., Noguchi, Shuhei, Noro, Yukihiko, Nurtdinov, Ramil, Okazaki, Yasushi, Orlando, Valerio, Paquette, Denis, Parr, Callum J.C., Rackham, Owen J.L., Rizzu, Patrizia, Sánchez Martinez, Diego Fernando, Sandelin, Albin, Sanjana, Pillay, Semple, Colin A.M., Shibayama, Youtaro, Sivaraman, Divya M., Suzuki, Takahiro, Szumowski, Suzannah C., Tagami, Michihira, Taylor, Martin S., Terao, Chikashi, Thodberg, Malte, Thongjuea, Supat, Tripathi, Vidisha, Ulitsky, Igor, Verardo, Roberto, Vorontsov, Ilya E., Yamamoto, Chinatsu, Young, Robert S., Baillie, J. Kenneth, Forrest, Alistair R.R., Guigó, Roderic, Hoffman, Michael M., Hon, Chung Chau, Kasukawa, Takeya, Kauppinen, Sakari, Kere, Juha, Lenhard, Boris, Schneider, Claudio, Suzuki, Harukazu, Yagi, Ken, de Hoon, Michiel J.L., Shin, Jay W., Carninci, Piero
Έκδοση 2020