SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells

por Moody, Jonathan, Kouno, Tsukasa, Chang, Jen-Chien, Ando, Yoshinari, Carninci, Piero, Shin, Jay W, Hon, Chung-Chau
Publicado 2022

Temporal dynamics and transcriptional control using single-cell gene expression analysis

por Kouno, Tsukasa, de Hoon, Michiel, Mar, Jessica C, Tomaru, Yasuhiro, Kawano, Mitsuoki, Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Shin, Jay W
Publicado 2013

Decoding Neuronal Diversification by Multiplexed Single-cell RNA-Seq

por Luginbühl, Joachim, Kouno, Tsukasa, Nakano, Rei, Chater, Thomas E., Sivaraman, Divya M., Kishima, Mami, Roudnicky, Filip, Carninci, Piero, Plessy, Charles, Shin, Jay W.
Publicado 2021

SCPortalen: human and mouse single-cell centric database

por Abugessaisa, Imad, Noguchi, Shuhei, Böttcher, Michael, Hasegawa, Akira, Kouno, Tsukasa, Kato, Sachi, Tada, Yuhki, Ura, Hiroki, Abe, Kuniya, Shin, Jay W, Plessy, Charles, Carninci, Piero, Kasukawa, Takeya
Publicado 2018

Microglia integration into human midbrain organoids leads to increased neuronal maturation and functionality

por Sabate‐Soler, Sonia, Nickels, Sarah Louise, Saraiva, Cláudia, Berger, Emanuel, Dubonyte, Ugne, Barmpa, Kyriaki, Lan, Yan Jun, Kouno, Tsukasa, Jarazo, Javier, Robertson, Graham, Sharif, Jafar, Koseki, Haruhiko, Thome, Christian, Shin, Jay W., Cowley, Sally A., Schwamborn, Jens C.
Publicado 2022

Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians

por Hashimoto, Kosuke, Kouno, Tsukasa, Ikawa, Tomokatsu, Hayatsu, Norihito, Miyajima, Yurina, Yabukami, Haruka, Terooatea, Tommy, Sasaki, Takashi, Suzuki, Takahiro, Valentine, Matthew, Pascarella, Giovanni, Okazaki, Yasushi, Suzuki, Harukazu, Shin, Jay W., Minoda, Aki, Taniuchi, Ichiro, Okano, Hideyuki, Arai, Yasumichi, Hirose, Nobuyoshi, Carninci, Piero
Publicado 2019

LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C

por Ducoli, Luca, Agrawal, Saumya, Sibler, Eliane, Kouno, Tsukasa, Tacconi, Carlotta, Hon, Chung-Chao, Berger, Simone D., Müllhaupt, Daniela, He, Yuliang, Kim, Jihye, D’Addio, Marco, Dieterich, Lothar C., Carninci, Piero, de Hoon, Michiel J. L., Shin, Jay W., Detmar, Michael
Publicado 2021

Single-Cell RNA-Seq Reveals LRRC75A-Expressing Cell Population Involved in VEGF Secretion of Multipotent Mesenchymal Stromal/Stem Cells Under Ischemia

por Miura, Takumi, Kouno, Tsukasa, Takano, Megumi, Kuroda, Takuya, Yamamoto, Yumiko, Kusakawa, Shinji, Morioka, Masaki Suimye, Sugawara, Tohru, Hirai, Takamasa, Yasuda, Satoshi, Sawada, Rumi, Matsuyama, Satoko, Kawaji, Hideya, Kasukawa, Takeya, Itoh, Masayoshi, Matsuyama, Akifumi, Shin, Jay W, Umezawa, Akihiro, Kawai, Jun, Sato, Yoji
Publicado 2023

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

por Kouno, Tsukasa, Moody, Jonathan, Kwon, Andrew Tae-Jun, Shibayama, Youtaro, Kato, Sachi, Huang, Yi, Böttcher, Michael, Motakis, Efthymios, Mendez, Mickaël, Severin, Jessica, Luginbühl, Joachim, Abugessaisa, Imad, Hasegawa, Akira, Takizawa, Satoshi, Arakawa, Takahiro, Furuno, Masaaki, Ramalingam, Naveen, West, Jay, Suzuki, Harukazu, Kasukawa, Takeya, Lassmann, Timo, Hon, Chung-Chau, Arner, Erik, Carninci, Piero, Plessy, Charles, Shin, Jay W.
Publicado 2019

Brainstem Organoids From Human Pluripotent Stem Cells

por Eura, Nobuyuki, Matsui, Takeshi K., Luginbühl, Joachim, Matsubayashi, Masaya, Nanaura, Hitoki, Shiota, Tomo, Kinugawa, Kaoru, Iguchi, Naohiko, Kiriyama, Takao, Zheng, Canbin, Kouno, Tsukasa, Lan, Yan Jun, Kongpracha, Pornparn, Wiriyasermkul, Pattama, Sakaguchi, Yoshihiko M., Nagata, Riko, Komeda, Tomoya, Morikawa, Naritaka, Kitayoshi, Fumika, Jong, Miyong, Kobashigawa, Shinko, Nakanishi, Mari, Hasegawa, Masatoshi, Saito, Yasuhiko, Shiromizu, Takashi, Nishimura, Yuhei, Kasai, Takahiko, Takeda, Maiko, Kobayashi, Hiroshi, Inagaki, Yusuke, Tanaka, Yasuhito, Makinodan, Manabu, Kishimoto, Toshifumi, Kuniyasu, Hiroki, Nagamori, Shushi, Muotri, Alysson R., Shin, Jay W., Sugie, Kazuma, Mori, Eiichiro
Publicado 2020

Functional annotation of human long noncoding RNAs via molecular phenotyping

por Ramilowski, Jordan A., Yip, Chi Wai, Agrawal, Saumya, Chang, Jen-Chien, Ciani, Yari, Kulakovskiy, Ivan V., Mendez, Mickaël, Ooi, Jasmine Li Ching, Ouyang, John F., Parkinson, Nick, Petri, Andreas, Roos, Leonie, Severin, Jessica, Yasuzawa, Kayoko, Abugessaisa, Imad, Akalin, Altuna, Antonov, Ivan V., Arner, Erik, Bonetti, Alessandro, Bono, Hidemasa, Borsari, Beatrice, Brombacher, Frank, Cameron, Christopher J.F., Cannistraci, Carlo Vittorio, Cardenas, Ryan, Cardon, Melissa, Chang, Howard, Dostie, Josée, Ducoli, Luca, Favorov, Alexander, Fort, Alexandre, Garrido, Diego, Gil, Noa, Gimenez, Juliette, Guler, Reto, Handoko, Lusy, Harshbarger, Jayson, Hasegawa, Akira, Hasegawa, Yuki, Hashimoto, Kosuke, Hayatsu, Norihito, Heutink, Peter, Hirose, Tetsuro, Imada, Eddie L., Itoh, Masayoshi, Kaczkowski, Bogumil, Kanhere, Aditi, Kawabata, Emily, Kawaji, Hideya, Kawashima, Tsugumi, Kelly, S. Thomas, Kojima, Miki, Kondo, Naoto, Koseki, Haruhiko, Kouno, Tsukasa, Kratz, Anton, Kurowska-Stolarska, Mariola, Kwon, Andrew Tae Jun, Leek, Jeffrey, Lennartsson, Andreas, Lizio, Marina, López-Redondo, Fernando, Luginbühl, Joachim, Maeda, Shiori, Makeev, Vsevolod J., Marchionni, Luigi, Medvedeva, Yulia A., Minoda, Aki, Müller, Ferenc, Muñoz-Aguirre, Manuel, Murata, Mitsuyoshi, Nishiyori, Hiromi, Nitta, Kazuhiro R., Noguchi, Shuhei, Noro, Yukihiko, Nurtdinov, Ramil, Okazaki, Yasushi, Orlando, Valerio, Paquette, Denis, Parr, Callum J.C., Rackham, Owen J.L., Rizzu, Patrizia, Sánchez Martinez, Diego Fernando, Sandelin, Albin, Sanjana, Pillay, Semple, Colin A.M., Shibayama, Youtaro, Sivaraman, Divya M., Suzuki, Takahiro, Szumowski, Suzannah C., Tagami, Michihira, Taylor, Martin S., Terao, Chikashi, Thodberg, Malte, Thongjuea, Supat, Tripathi, Vidisha, Ulitsky, Igor, Verardo, Roberto, Vorontsov, Ilya E., Yamamoto, Chinatsu, Young, Robert S., Baillie, J. Kenneth, Forrest, Alistair R.R., Guigó, Roderic, Hoffman, Michael M., Hon, Chung Chau, Kasukawa, Takeya, Kauppinen, Sakari, Kere, Juha, Lenhard, Boris, Schneider, Claudio, Suzuki, Harukazu, Yagi, Ken, de Hoon, Michiel J.L., Shin, Jay W., Carninci, Piero
Publicado 2020