Sigmoni: classification of nanopore signal with a compressed pangenome index

por Shivakumar, Vikram S., Ahmed, Omar Y., Kovaka, Sam, Zakeri, Mohsen, Langmead, Ben
Publicado 2023

Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED

por Kovaka, Sam, Fan, Yunfan, Ni, Bohan, Timp, Winston, Schatz, Michael C.
Publicado 2020

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

por Kovaka, Sam, Zimin, Aleksey V., Pertea, Geo M., Razaghi, Roham, Salzberg, Steven L., Pertea, Mihaela
Publicado 2019

Pan-genomic matching statistics for targeted nanopore sequencing

por Ahmed, Omar, Rossi, Massimiliano, Kovaka, Sam, Schatz, Michael C., Gagie, Travis, Boucher, Christina, Langmead, Ben
Publicado 2021

High resolution copy number inference in cancer using short-molecule nanopore sequencing

por Baslan, Timour, Kovaka, Sam, Sedlazeck, Fritz J, Zhang, Yanming, Wappel, Robert, Tian, Sha, Lowe, Scott W, Goodwin, Sara, Schatz, Michael C
Publicado 2021

Genomics and Development of Lentinus tigrinus: A White-Rot Wood-Decaying Mushroom with Dimorphic Fruiting Bodies

por Wu, Baojun, Xu, Zhangyi, Knudson, Alicia, Carlson, Alexis, Chen, Naiyao, Kovaka, Sam, LaButti, Kurt, Lipzen, Anna, Pennachio, Christa, Riley, Robert, Schakwitz, Wendy, Umezawa, Kiwamu, Ohm, Robin A, Grigoriev, Igor V, Nagy, László G, Gibbons, John, Hibbett, David
Publicado 2018